KEGG   Pleurodeles waltl (Iberian ribbed newt): 138303980
Entry
138303980         CDS       T10800                                 
Symbol
RAE1
Name
(RefSeq) mRNA export factor RAE1
  KO
K14298  mRNA export factor
Organism
pwl  Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pwl00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    138303980 (RAE1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pwl03019]
    138303980 (RAE1)
   03036 Chromosome and associated proteins [BR:pwl03036]
    138303980 (RAE1)
Messenger RNA biogenesis [BR:pwl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     138303980 (RAE1)
Chromosome and associated proteins [BR:pwl03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    138303980 (RAE1)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_EML_2 Beta-prop_WDR3_1st WDR55 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR3_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WD40_RFWD3 Beta-prop_Aladin Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_RSE1_2nd WD40_MABP1-WDR62_1st Beta-prop_Nup120_160 Beta-prop_ACSF4 WD40_MABP1-WDR62_2nd Beta-prop_WDR41 NBCH_WD40 ExoI_SH3 B-prop_COPA_B_2nd Beta-prop_SPT8
Other DBs
NCBI-GeneID: 138303980
NCBI-ProteinID: XP_069099693
LinkDB
Position
7:complement(218752661..218849127)
AA seq 368 aa
MSLFGSSTGFGTGGTSMFGSTPTDNHNPMKDIEVTSPPDDSISCLSFSPPTLPGNFLIAG
SWANDVRCWEVQDNGQTIPKAQQMHTGPVLDVCWSDDGTKVFTASCDKTAKMWDLNSNQA
IQVAQHESPIKTVHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPLLTLPLPERCYCADVVY
PMAAVATADRGLIVYQLENQPSEFRRIDSPLKHQHRCIAIFKDKQNKPTGFALGSIEGRV
AIQYINPPNPTKDNFTFKCHRSNGANTAPPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPISACAFNNNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
ELKPRNKK
NT seq 1107 nt   +upstreamnt  +downstreamnt
atgagtttgtttggatcaagcactggctttggaactggcggcaccagcatgtttggctcc
acacctaccgataaccacaatcccatgaaggatattgaagttacatctccaccagatgac
agtattagctgcctttctttcagtccacccacattaccaggcaacttcctgattgctggg
tcctgggctaatgacgtgcggtgttgggaggtgcaggacaatggacaaactattccaaag
gctcagcagatgcacacagggccagtactggatgtgtgttggagtgatgatgggaccaaa
gtatttacagcttcctgtgataaaaccgcgaaaatgtgggatctgaatagtaatcaagct
atacaagtagcacagcatgaatctcctatcaagaccgtccactggataaaagccccaaat
tactcgtgtataatgactggcagctgggataagacattaaagttttgggacacacgatcc
ccgaaccctttgctgacattgccgctgcctgaaagatgctattgtgctgatgtggtttac
cccatggctgctgtcgcaactgctgatagaggtcttatagtttaccaactagagaaccag
ccctcggaattcaggaggatagattcccctctcaaacaccagcaccgctgtattgccata
tttaaagacaaacaaaataaacccaccggatttgctttgggaagtattgaaggaagagtg
gcgatccagtacatcaacccgccaaatcccacgaaagataacttcacttttaaatgccat
cgttcaaatggagctaatacagcaccacctcaagatatctatgctgtgaatggtattgca
tttcatcctgtacatggtacactagcaacagttggttctgatggaagattcagcttttgg
gataaagatgcaagaaccaaactgaaaacatctgaacagttagatcagccaatatctgcc
tgcgcctttaataataatggaaacatatttgcatacgcatccagctacgattggtccaag
ggccatgaattttataatcctcaaaagaaaaactacatttttctgcgtaatgcagcagaa
gagttaaagcctcgaaataagaagtag

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