Pleurodeles waltl (Iberian ribbed newt): 138304478
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Entry
138304478 CDS
T10800
Symbol
THOC3
Name
(RefSeq) THO complex subunit 3
KO
K12880
THO complex subunit 3
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03013
Nucleocytoplasmic transport
pwl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138304478 (THOC3)
09122 Translation
03013 Nucleocytoplasmic transport
138304478 (THOC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138304478 (THOC3)
03041 Spliceosome [BR:
pwl03041
]
138304478 (THOC3)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
138304478 (THOC3)
Spliceosome [BR:
pwl03041
]
Complex C
Other components
EJC/TREX
138304478 (THOC3)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
138304478 (THOC3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_WDHD1_1st
ANAPC4_WD40
WDR55
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
Beta-prop_WDR19_1st
WD40_Gbeta
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_EML
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
Beta-prop_NOL10_N
Beta-prop_WDR36-Utp21_1st
DSE1_N
WD40_RFWD3
eIF2A
Beta-prop_TEP1_C
NBCH_WD40
RMC1_N
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
B-prop_COPA_B_2nd
Tricorn_2nd
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
PAC11
TRM82_WD
Beta-prop_NUP159_NUP214
PD40
Beta-prop_ACSF4
Beta-prop_WDR41
Beta-prop_SPT8
Beta-prop_EIPR1
ASA1
CFAP251_N
Beta-prop_Nup120_160
Beta-prop_NWD2_C
TP_0598_N
DPPIV_N
Cytochrom_D1
Beta-prop_ELP1_1st
Beta-prop_At4g14310
Beta-prop_WDR11_1st
PROPPIN
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
138304478
NCBI-ProteinID:
XP_069100688
LinkDB
All DBs
Position
7:615274902..615369821
Genome browser
AA seq
322 aa
AA seq
DB search
MASLYTQEMQEFFKANNKTREFPAHTAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDRL
VKENNYRGHGDSVDQLCWHPTNPDLFVTASGDKTVRIWDVRSGKCITTVTTKGENINICW
SPDGQTIAVGNKDDVVTFIDAKMHRCKVEEQFKFEVNEISWNNDNNLFFLTNGNGCINIL
SYPDLKPVQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDVDELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAHVETGEKLCEVQCESPTFTVAWHPKRPLLAFACDDK
DGKYDSNREAGTVKLFGLPNDS
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atggcatctctgtacacgcaagagatgcaggagttctttaaagcgaataacaagaccagg
gagttcccggcgcacaccgccaaggttcactcagtcgcctggagttgcgacggacgtcgc
ttggcgtccgggtccttcgacaagacggcaagcgtcttcctgctagaaaaagaccgactg
gtgaaggagaataattatcgaggacatggcgatagcgtggatcaactttgctggcatccg
accaatccggacctttttgtcactgcatcgggggacaaaactgttagaatttgggatgta
cgatctggaaaatgcattaccactgttaccacaaaaggagaaaatattaacatttgctgg
agcccagatggacagaccatcgctgttgggaacaaggatgatgttgtgacattcatcgat
gccaagatgcatcgctgcaaagttgaggaacagttcaaattcgaggtgaatgaaatatca
tggaacaatgacaacaaccttttctttctgaccaacggcaatgggtgcatcaatattcta
agctatccagatctgaagccagtgcagtctatcaatgctcacccatccaactgcatctgc
attaagtttgaccccacagggaagtattttgctacaggtagtgcagatgcacttgtcagc
ctgtgggacgtagatgaacttgtctgtgtgcgctgcttttccagacttgactggccggtc
agaacattgagcttcagccatgatgggaaaatgttggcttcggcatctgaggatcatttt
attgacattgcccatgtggaaacaggtgagaagctatgtgaggtacagtgtgagtcaccc
accttcacagtggcttggcaccccaaacgccccctgctggcctttgcatgtgatgacaag
gatggcaaatatgacagcaatcgagaagctggcaccgtcaagttgtttgggcttccgaat
gactcctaa
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