Paenibacillus woosongensis: QNH46_00210
Help
Entry
QNH46_00210 CDS
T09437
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pwn
Paenibacillus woosongensis
Pathway
pwn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pwn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QNH46_00210 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pwn03400
]
QNH46_00210 (mfd)
Enzymes [BR:
pwn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QNH46_00210 (mfd)
DNA repair and recombination proteins [BR:
pwn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QNH46_00210 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WHX49175
UniProt:
A0AA95IAU4
LinkDB
All DBs
Position
41703..45227
Genome browser
AA seq
1174 aa
AA seq
DB search
MLQALIQAFSKDPDFAAAVAGVNSGMKEQLISGLSGSSKQIMLAAMYRETGRPLLVVTHN
MFAAQKIAEDLQEALSAEEVLLYPANELVAAESAVSSPETLAQRIEVLLKCSQGFRGVVV
VPYSGIRRFIPSPETMAAAHLDITLGGTLQLDHFLSKMVELGYERVERVESRGEMSIRGG
IIDFYPLTAELAYRIELFDDEIDSIRTFDPADQRSIDQVKHVSIPPCKELIASKERLTKA
AQIVSERLEQQLEKMTDRQAKQKLKEEISREIELLREQVYFPENYKYISLIYPENKTLYD
FMAEDALLILDEPARLLETAKQLERDEAEWHMHLFQNGKSLPDLPLAMEGDQVLYRRPFQ
TLFLSLFLRQVPHVQPQNIINFVSRAMQDFHGQMNVLKAEMDRWKKSGANVIMLAGGEER
IERMRRVLLDYGIEEPTLLQGNLQSGFELPSVHLVVITEGEMFSKKQRKARKITKSMDNA
ERIKSYTELKVGDYVVHQNHGIGKYLGIGTLEVGGIHKDYMHIMYAGGDKLSVPIEQIDL
IQKYVGSEDKEPKVYKLGGNEWTRVKNKVRSSVQDIADDLIKLYAERQASPGYGFEKDTP
EQQEFEAMFPYEETRDQIRAIEEIKKDMELSRPMDRLLCGDVGYGKTEVAIRAAFKAAIE
GKQVAVLVPTTILAQQHYETFRERFSGYPINIQTLSRFRSRKEQNETIKGVRQGTVDIVI
GTHRLLSQDVVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIESPPENRFPVQTYVVEHSQALVREAIERELARGGQIYYLYNRVQGIQEMAAQ
ISMLVPEARVGVGHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKSLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKVEMLGEKSPEDTAWNTTIDLG
IDAYLPSDYIYDSIQKIEIYKKTASAAAFEDVAELEDELLDRFGELPEAVENLLSVARVK
LYGKLYGIESITRRGDETVIKFLDGREKDILPAKLAEVGNLFGRRVQFNQGSAMLIRIKT
KELDDKALMGLLEQFLEALKVSFKLKGELQDVSK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgctacaagcacttatacaagctttttcgaaagatccggattttgcggctgccgtagca
ggcgtaaattcgggaatgaaagaacaattgatctccggtttatccggatcgtctaaacaa
atcatgctggccgcgatgtacagggaaaccggccgtccccttctcgtcgtgacccacaat
atgttcgcagctcagaaaattgcagaggatttgcaggaagcgctatcggccgaagaggtg
ctgctgtatccggcgaacgagcttgtcgcggcggaatcggcggtatcaagtcccgagacg
ctggcgcagcgcatcgaggtactgctcaaatgctcccaaggattccggggcgttgtcgtg
gtgccttattccggcattcgcagatttattccgtcaccggagacgatggctgccgcgcat
ctggacattacacttggcggtacactgcagctggatcattttttaagcaaaatggtcgag
cttggctatgagagagttgaacgggtagaatcacgtggcgagatgagcatccgcggggga
atcatcgatttctatccgctgactgcggagctcgcttaccggatagaactgttcgacgat
gagatcgactcgatccgtacgtttgatccggcggatcagcgttctatcgatcaggtgaag
catgtatcgatccctccatgcaaggagcttatcgcctccaaggagcgattgaccaaggca
gcacaaattgtatcggagcggctggagcagcagctggagaaaatgaccgatcgtcaggcc
aagcaaaaactgaaagaggaaatttccagggaaattgaactgctgcgtgagcaggtgtat
tttccggaaaactataaatacatttcgctgatctatcctgagaataaaacgctgtatgat
tttatggcggaagacgctttgctgatcctggacgaaccagccaggctgctggagacggct
aaacagctggagcgggatgaagcggaatggcatatgcatctgttccaaaatggcaaaagc
ttgcctgatctgccgcttgcgatggagggggatcaggttctttaccgtcggccgtttcag
acgttgttcctatcgctcttcctcaggcaggtgcctcatgtacagccgcaaaacattatc
aatttcgtcagccgggcgatgcaggatttccatggccaaatgaacgtactcaaggcggag
atggaccgctggaagaaaagcggagccaacgtgattatgctagctggcggcgaggagcgt
atcgaacggatgcggcgggtgctgcttgactatggcattgaagagccaaccttgctgcaa
gggaatctgcagtcggggttcgagctgccttcggtgcatctggtcgtgattacggaagga
gaaatgttctccaagaagcagcgcaaagcccgtaaaattacgaagagcatggataatgcc
gaacgcataaagagctatacggagcttaaagttggcgattatgtagttcaccagaatcac
gggatcgggaaatatcttggcatcggtacgttggaagtcggcggcattcacaaagactac
atgcatattatgtatgcgggcggagataagctgtccgtaccgatcgagcagattgattta
attcagaaatatgtaggctccgaagataaggaacccaaagtatacaagctgggcggaaac
gaatggacgagggtcaagaacaaggtccgttcctccgtacaggatatcgctgacgacctc
atcaagctgtatgctgaacgtcaggcatcgcctggctacggatttgagaaagacacgccc
gagcagcaggaattcgaagcgatgttcccctatgaggagacaagggatcagatcagggcg
atcgaggaaatcaagaaggacatggagctgtcccgccctatggaccgcctgttatgcggc
gatgttggctacggcaagacagaggtcgcaatccgggctgctttcaaggccgcgattgaa
gggaagcaggtcgctgttctagtgccgacgacgatcctggcacagcagcactacgagaca
tttcgcgagagattttcgggttatccgatcaacatacagaccttaagccgcttccgcagc
cggaaagagcagaacgagacgatcaagggtgtccgtcaagggacggtcgacatcgttatc
gggacgcatcgcctattgtcccaggacgtagtattcaaggatttgggactgctgatcgtc
gatgaggagcagcgttttggcgtaacccataaggagaagctcaagaagctgaagacgaac
gttgatgtattaacgctgaccgctacgccgatacctagaacgcttcacatgtctatgctg
ggcgtgcgggatctgtcggtcatcgaatcaccaccggagaaccggttccctgtacagacc
tacgtcgtggagcatagtcaggctctggtccgcgaggcgattgaacgggaactggcgcgg
ggcgggcagatctattacctgtataaccgtgtccaaggcattcaggagatggccgcacaa
atctcgatgctggttcctgaagccagagtgggggttgggcatggccagatgtctgagcaa
gagctggagaagaccatcctggattttctagacggcgagtatgacgtactggtcagtacg
agcatcatcgagaccggggtagatatcccaaatgtaaatacgcttatcgttcatgatgcg
gataaaatgggcctatcccagctataccaattgcgcggacgcgtcggccgttcaaatcgg
atcgcttacgcttattttacctatcagcgggataaatccttgacggaagtggcagagaag
cgtcttcagtccatcaaggaatttacggagcttggttccggattcaaaattgcgatgaga
gacttgtccatacgcggggcaggaaatttgcttggcgccgagcagcacggatttatcgcg
tcggtaggctttgacctgtactctcaaatgctggctgaagaaatccagaagcggaaggta
gagatgttaggcgaaaagtcgcctgaggatacggcctggaatacgaccatcgacctcgga
attgatgcgtatttaccttctgactatatttatgatagtattcaaaagatcgagatttac
aaaaaaacagcttcggccgccgctttcgaagacgttgccgagctggaggacgagcttctc
gaccggtttggagaattgccggaggctgtggaaaacttgctttccgtggcccgggtgaag
ctctacggcaagctttatggaatcgaatccattacacggcgcggagacgagactgtcatc
aagttcctcgatgggcgggagaaggatattcttccagccaagcttgcggaagttggcaat
ctgttcggaaggcgtgtacaatttaatcagggttcggcgatgctgatccgaatcaaaacc
aaggaattggacgataaagcattgatgggtttgttggagcaattccttgaggccctgaag
gtttcgttcaaattgaaaggggaactacaagatgtctcgaagtaa
DBGET
integrated database retrieval system
