Paulownia witches'-broom phytoplasma: HGD80_00425
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Entry
HGD80_00425 CDS
T09302
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pwp
Paulownia witches'-broom phytoplasma
Brite
KEGG Orthology (KO) [BR:
pwp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pwp03032
]
HGD80_00425 (topA)
03400 DNA repair and recombination proteins [BR:
pwp03400
]
HGD80_00425 (topA)
Enzymes [BR:
pwp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HGD80_00425 (topA)
DNA replication proteins [BR:
pwp03032
]
Prokaryotic type
DNA Topoisomerases
HGD80_00425 (topA)
DNA repair and recombination proteins [BR:
pwp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HGD80_00425 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QYC31088
LinkDB
All DBs
Position
71961..73904
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AA seq
647 aa
AA seq
DB search
MKSKVIIVESPAKTKTLSRFLNDEFLILSSKGHIRDLSLKGKDRMGIDIEKGFIPKYSII
KEKDNIVETLIQKTKGKEVLLATDPDREGEAIAWHLSQILNLDPQKTNRIVFREITKEAV
LKALQQPRKIDELLVFSQETRRMLDRIIGFKLSRLVRRLKSQSAGRVQSVALKLIVDLEE
KIKAFVPEEYYIITAFFKDFQAEYQNPYKGKTKAKEAFKIVQQITDKPFLVKELKQKEAK
QSPKPPFITSTLQQEAINSLNITSNQVMRVAQKLYEGVDILGESIGLITYMRTDSQRLAD
SFVKDAQKLIKTQYGKEYLGTCKTNKKAQSQDAHEAIRPTDLSKTPESLAPHLDKYENKL
YKLIYQRTLASLMTPAIFQKTQVFFEVANHIFLTEGLIKTFDGYQKILQDGTKDKIIPSF
KLNETYLPQEIQNLQKFTNPPARFSESTLIKTLEKLNIGRPSTYSQIIFTLKKRIYVDLV
EKRFVPTEQGILTAKNLELFFKQIIDVKYTAKMEENLDKISSGLVNNKELLQEFYDAFKQ
LYQIADQKLEKPKDIETEQKCNLCNAPLLIKKGRYGNFLGCSRFPECKNIVSLKEKSSSV
ETNPSMQTEQKCNLCNAPLLIKKGRYGNFLGCSRFPECKNIVKIKKT
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaaaagttattatagtagaatctcctgctaaaaccaaaactttaagccgtttt
ttaaatgacgaatttttaattttatcttccaaaggtcatattagagatttgtcgctaaaa
ggcaaagacagaatgggaattgacatcgaaaaaggatttattcctaaatacagcattatc
aaagaaaaagacaatatcgtagaaactcttatccaaaaaactaaaggcaaagaagtgcta
ttagcaaccgatcctgatcgcgaaggagaagcaattgcttggcatttatcacaaattctt
aatttagacccccaaaaaactaatagaattgtttttcgagaaattaccaaagaagcagtc
ttaaaagctttgcaacaacctcgcaaaatcgatgaactattagtgttttcacaagaaact
cgcagaatgctagaccgcattattgggtttaaactgtcgcgtttggtaaggagactcaaa
tcacaatcagcaggaagagtgcaatcagttgcccttaaattaattgttgatttagaagaa
aaaataaaagcttttgtccctgaagaatactatattattactgctttttttaaagatttt
caagcagaataccaaaatccttacaaaggcaaaaccaaagccaaagaagcttttaaaatt
gtccaacaaataacagataaaccctttttagttaaagaattaaaacaaaaagaagccaaa
caatcacccaaaccaccctttattacatctaccctgcaacaagaagccatcaacagccta
aatataacttctaatcaagttatgagagttgctcaaaaactttatgaaggagttgatatt
ttaggtgaatctatagggttaattacttatatgagaacagattcgcaaagacttgcagac
agctttgttaaagatgctcaaaaattaattaaaacacaatatggcaaagaatatttaggt
acttgcaaaaccaataaaaaagctcagtcgcaagacgctcacgaagctataaggcccact
gatttatccaaaacgcccgaaagcctagcccctcatcttgataaatacgaaaataaactc
tataaacttatttatcaaagaactttggcttctttaatgacacctgccatatttcaaaaa
acccaagttttttttgaagttgcaaaccatatttttttaactgaaggtttgataaaaact
ttcgatggctatcaaaaaattttgcaagatggcaccaaagacaaaattattccttccttt
aaattaaatgaaacttatttgcctcaagaaatccaaaatttacaaaaatttactaatcct
ccagcacgcttttctgaatccactttgattaaaactttagaaaaactaaatattggaagg
ccttctacttactctcaaatcatttttaccctcaaaaaaagaatttatgttgatttagta
gaaaaacgttttgttcctaccgaacaaggaattttgactgctaaaaacttagaattgttt
ttcaaacaaattattgatgttaaatatactgccaaaatggaagaaaatttagataaaatc
tcttcaggattagttaataataaagaattattgcaagaattttatgatgctttcaaacaa
ctttatcaaatagccgatcaaaaattagaaaaaccaaaagatatcgaaaccgaacaaaaa
tgtaatttatgcaatgcccctttactcatcaaaaaaggacgctatggtaattttttaggt
tgcagtcgctttcctgaatgtaaaaatattgtttctttaaaagaaaaatcaagttctgta
gaaacaaatccttctatgcaaaccgaacaaaaatgtaatttatgcaatgcccctttactc
atcaaaaaaggacgctatggtaattttttaggttgcagtcgctttcctgaatgtaaaaat
attgttaaaattaaaaaaacttaa
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