Paulownia witches'-broom phytoplasma: HGD80_00700
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Entry
HGD80_00700 CDS
T09302
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
pwp
Paulownia witches'-broom phytoplasma
Brite
KEGG Orthology (KO) [BR:
pwp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwp03019
]
HGD80_00700
03009 Ribosome biogenesis [BR:
pwp03009
]
HGD80_00700
Enzymes [BR:
pwp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HGD80_00700
Messenger RNA biogenesis [BR:
pwp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HGD80_00700
Ribosome biogenesis [BR:
pwp03009
]
Prokaryotic type
rRNA helicases
HGD80_00700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
PhoH
DsrH
Motif
Other DBs
NCBI-ProteinID:
QYC31138
LinkDB
All DBs
Position
138248..139795
Genome browser
AA seq
515 aa
AA seq
DB search
MHNYIQKKILQLQFQTLTPIQKEVFSQFEKPGNLVGIAPTGTGKTHAYLLPILSKIDFQK
PFTQAIILVPTNDLVFQVWEMFKQIEKTNFTKILYGGMDKQKAIATFEKKQPSLIIATPD
KLLEYAFKFKKINLKYVSYLVLDEADMMFDEVFLTSLDPLINHLKAKILLFSATITEQLK
PFINRYFGKSTFIDVYKQSNLNRTFYLLETTTSRMQTLIHLTKVLNPYLALVFVNEKKEQ
ELVFQTLQNDSLKLLNYNSALSVKQRKQSLKAIHKLKYQYVIASDLAARGIDFDASCVIH
YNLPSHLEFFFHRSGRTSRMGKKGEIIVLYDPQDIKQKDKINKLIQLGIAFHQASLNKDG
FIRTQNYKTITTTKTDKPNKNNKNTKNIQKNQNNQTNQKNNYNQSSQKQFFKQNKFTKES
KLPKKENNKDSTLETPNKTQNTVQKTNNNKKTKSKQVKPNYKKKNQKENQSPKSKSTFLQ
TKFKPKAKYKSQKPSKNKLTNYKTNYQEKTKLIYN
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
ttgcacaactatattcaaaaaaaaatattacaacttcaattccaaactttaactcccatc
caaaaagaagtcttttcacaatttgaaaaaccaggtaatctagtaggaattgctcctaca
ggaacaggcaaaacccatgcttatcttttaccgatattaagtaaaattgatttccaaaaa
ccatttactcaagcaattattttagtccctaccaatgatttagtatttcaagtatgggaa
atgtttaaacaaattgaaaaaactaattttaccaaaattctttacggaggaatggataaa
caaaaagcaattgctacttttgaaaaaaaacaaccttcattaattattgcaactcccgat
aagttattagaatacgcgtttaaattcaaaaaaattaacttaaaatatgtatcttattta
gtccttgatgaagctgatatgatgtttgatgaggtatttttaacttccctagacccttta
attaatcatcttaaagccaaaattttattattttcagctaccattaccgaacaattaaaa
ccttttattaatcgttattttggtaaatctacttttattgatgtttataaacaaagtaat
cttaatcgtactttttatttattagaaacaactacaagcagaatgcagaccttaattcat
cttaccaaagtccttaatccttatttagcactcgtatttgtcaatgaaaaaaaagaacaa
gaattagtatttcaaactttacaaaatgacagtctcaaattgcttaattacaactctgct
ttatcagttaaacaaagaaaacaaagccttaaagctattcataaattaaaatatcagtac
gtaattgcatcagatcttgcagctagaggaattgattttgatgcttcttgtgttattcac
tacaacttaccttcacaccttgaattttttttccacagaagtggtagaacatcaagaatg
ggcaaaaaaggtgaaatcattgttttgtacgacccccaagacattaaacaaaaagacaaa
attaataaattaattcaattaggaattgcttttcatcaagcctctttaaataaagatggt
tttataagaactcaaaattacaaaactattacaactaccaaaactgataagccaaataaa
aacaataaaaataccaaaaacattcaaaaaaatcaaaacaatcaaactaaccaaaaaaac
aattacaaccaatctagccaaaaacaatttttcaaacaaaacaaatttaccaaagaatcc
aaacttcctaaaaaagaaaataataaagattctactttggaaacaccaaataaaactcaa
aacacagtccaaaaaacaaacaacaacaaaaaaactaaaagcaaacaagtaaaacccaat
tataagaaaaagaaccaaaaagaaaaccaatcccccaaaagcaaaagtacttttttgcaa
acaaaattcaaaccaaaagccaaatacaaatcacaaaaaccatcaaaaaataaattaacg
aattacaaaactaattatcaagaaaaaactaaactaatttataactaa
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