Paulownia witches'-broom phytoplasma: HGD80_01960
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Entry
HGD80_01960 CDS
T09302
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pwp
Paulownia witches'-broom phytoplasma
Brite
KEGG Orthology (KO) [BR:
pwp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HGD80_01960 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pwp03021
]
HGD80_01960 (rpoD)
Transcription machinery [BR:
pwp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HGD80_01960 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QYC31323
LinkDB
All DBs
Position
379711..381108
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AA seq
465 aa
AA seq
DB search
MEFDNIIKTLNEQAGREQKLTSQLIMSFLQNKNIKIPYQQIAQNLKEKGIQIISCETQAA
PSLNENPNQNDTHPQTNTTNDDFTDLDSELTNENLENTDDNKDEDNTQDSEEDIQDFDIS
EEDLISDEKLIELEEDEDEKIYKEEISKNHSDIKMDDSVRMYLKEIGQIPLLSLAEEQKK
SILVFLGKQAKQKLAKHKTKEIELSEEQLQEAHDQIEQARRAKDILVESNYRLVVSIAKR
YIGRGILFLDLIQEGNMGLMRAVDKFDYQKGFKFSTYATWWIRQAITRAIADQARTIRIP
VHIVETINKMALCTRKLTQKLKKKPTVEELADKMNISAEKIRSIQYIEKKPISLEAPARE
NEEDETSLGDFISDPNILSPHEYMMKEVTQKLLDEVLENTLTDREEKVLKMRYGLLDGKT
HTLEEVGTLFGVTRERIRQIESKALRRLRTPAKQSKLKSLYHNHK
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggaattcgataacataatcaaaactttaaatgagcaagctggaagagaacaaaaacta
acatctcaattaattatgtcttttttgcaaaataaaaacataaaaataccatatcaacaa
atagcacaaaacctaaaagaaaaagggattcaaattatttcttgcgaaacacaagcagct
ccatccctaaatgaaaaccccaatcaaaatgatacgcacccccaaacaaacaccaccaat
gatgattttactgaccttgattccgaattaacaaacgaaaacttagaaaacacagatgac
aacaaagatgaagacaacacacaagactcagaagaagacatccaagattttgacatttct
gaagaggacttaatatcagatgaaaaactcatagaattagaagaagacgaagatgaaaaa
atttataaagaagaaatttctaaaaaccattctgatattaaaatggatgactcagttcgc
atgtatttaaaagaaattggtcaaatccctttgctttcgctagcagaagaacaaaaaaaa
tccattttagtttttttaggaaaacaagccaaacaaaagcttgccaagcacaaaaccaaa
gaaattgaattatccgaagaacaactccaagaagcacatgaccaaatcgaacaagcaagg
cgcgccaaagatattttggtagaatccaattatagattagtagtttccattgccaaacga
tatattggaagaggcattttgtttcttgatttaatccaagaaggcaacatgggcttaatg
cgtgcagtagataaattcgattatcaaaaaggatttaaattttctacctatgccacttgg
tggattagacaagccatcacaagagcgattgccgatcaagcaagaactatccgaattcct
gtccacatcgtagaaactattaataaaatggcactttgcactcgcaaattaactcaaaaa
cttaagaaaaaacctacagttgaagagttagccgacaaaatgaatatttctgctgaaaaa
attcgcagcatccaatatattgaaaaaaaacccatctctttggaagctcccgcaagagaa
aacgaagaagacgaaacttctttgggggattttatctcagatcccaacattttatccccc
cacgaatacatgatgaaagaagtaactcaaaagcttttagatgaagtcctagaaaatacc
ttaactgaccgcgaggaaaaagtattaaaaatgcgctatggtcttttagatggcaaaacc
catactttagaagaagtaggcactttatttggagttactagagaaagaatccgccaaatt
gaatccaaagctctaagacgactcagaactccagctaaacaaagcaaattaaaaagtttg
taccacaaccacaaataa
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