Paulownia witches'-broom phytoplasma: HGD80_02350
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Entry
HGD80_02350 CDS
T09302
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pwp
Paulownia witches'-broom phytoplasma
Pathway
pwp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HGD80_02350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwp03019
]
HGD80_02350
03009 Ribosome biogenesis [BR:
pwp03009
]
HGD80_02350
Enzymes [BR:
pwp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HGD80_02350
Messenger RNA biogenesis [BR:
pwp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HGD80_02350
Ribosome biogenesis [BR:
pwp03009
]
Prokaryotic type
rRNA helicases
HGD80_02350
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
Utp25_C
Cas3-like_C_2
Pro-kuma_activ
Motif
Other DBs
NCBI-ProteinID:
QYC30689
LinkDB
All DBs
Position
449011..450669
Genome browser
AA seq
552 aa
AA seq
DB search
MNTLFEQLPILEQTKKALKELNFIDATPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIP
IIEKIEPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFRALE
AKPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPEERQT
VLFSATLPPFIKKIASKYQKDTKILQVPVKNIAVNAIEQNYFLVKEVDKAKLLVRLLDLK
KDYSAILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATD
VAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQLKKLEYY
LKEKITLLDIPSVQSIKLQNAKNLEKKLLNIIEKNNEDATPNPLAQKLLETFSSEQIIQG
LLKNFLPKERNYTDILPPKMTTNNSFTRSRFGGESRFGSYGSNNSYGNNSYQRANSNFIE
VVINLGKKDNINPPILLKLLKDHFQIYGKNIGNIKHLTHETIFEVASRFWNPMKSKTNIR
FQNKTLILNKKD
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaatactttattcgaacaattacctattttagagcaaactaaaaaagctttaaaagaa
ctcaattttattgatgctactccaattcaggccttagtaattccagaaattataaaagga
cacgacgtaattggacaagctcaaacaggaacaggaaaaacttttgcttttggtattccc
attatcgaaaaaattgaaccaaaaatccaaaaaactcaaagtttaattttatgccctact
agagaattaactctccaagtatacgaagaattaaaaaaattactaagattttatcaagaa
ataagaatcgctgttgtttatggtggtgaatcttacaccaaacaatttagagccctagaa
gctaaacctcatttaattattgctactcctggacgtgcaattgaccatctagaaagaggt
aaaatcgacctctcagcactaaaaattctaactcttgacgaagcagatgaaatgttaaaa
atgggattccaagaagccttagaaacaatcttaaaaaagattccagaagaaagacaaact
gttttattctcagcaactctacctccatttattaaaaaaatagcaagcaaataccaaaaa
gacactaaaatcctacaagttcctgttaaaaacattgcagttaatgcaatcgaacaaaat
tactttttagtaaaagaagttgacaaagctaaattattagtacgtttactagacttaaaa
aaagattattcagctatcttatttgcaaacactaaaaaagatgttgacgaaattacagcc
taccttcaagacaaaggctttttagctgatgcagttcacggcgatttaaaacaaaatcaa
agacaatatgtaatgaataatttccgtaaaggcaaaatcaaaatcttaattgcaactgat
gtagctgcaagaggacttgacatttctgacatcaaaatggtaattaactatgacttacca
cacgaagacgaagtttatgttcaccgtatcggaagaactggaagagctggcaaaaaaggt
ttagcttacagtttaattagcccaagaaaagtaagccaacttaaaaaattagaatactac
ttaaaagaaaaaattactttactagatattccttctgttcaaagcatcaaattacaaaat
gccaaaaatttagaaaaaaagctattaaacatcattgaaaaaaacaacgaagacgctact
ccaaatccattagcacaaaagttattagaaactttttcttctgaacaaattatccaagga
ttattgaaaaactttttaccaaaagaaagaaattacactgacatccttcctccaaaaatg
actactaacaattcttttaccagatcgcgttttggtggcgaatctagatttggttcttat
ggttctaacaactcttacggcaataactcttaccaaagagcaaatagcaactttatagaa
gtagttattaatttaggcaaaaaagacaatattaatcctccaatattattaaaattatta
aaagaccatttccaaatttatggcaaaaatattggcaatatcaaacacttaactcacgaa
actatttttgaagtagcaagtcgtttttggaatccaatgaaaagcaaaactaatattcgt
ttccaaaacaaaactttaattcttaacaaaaaagattaa
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