Pectobacterium wasabiae: A7983_03105
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Entry
A7983_03105 CDS
T04535
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pws
Pectobacterium wasabiae
Pathway
pws03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pws00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7983_03105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pws03019
]
A7983_03105
03016 Transfer RNA biogenesis [BR:
pws03016
]
A7983_03105
Enzymes [BR:
pws01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A7983_03105
Messenger RNA biogenesis [BR:
pws03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A7983_03105
Transfer RNA biogenesis [BR:
pws03016
]
Prokaryotic type
tRNA degradation factors
A7983_03105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
Motif
Other DBs
NCBI-ProteinID:
AOR62272
LinkDB
All DBs
Position
complement(682363..684819)
Genome browser
AA seq
818 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREYILAHIAKRDTPIGREELAADLQLTGEEALEALRRRLR
AMERDGQLIFTRRQCYALPEKLDLLRGTVIGHRDGFGFLRVEGRKDDLYLSAEEMKRAIH
GDVVLAQPLGADRKGRREGRIVRVLEPRTGQIVGRYFVDAGVGFVVPDDSRLSFDILIPK
EEINGARMGFVVVVELTQRATRRTKAVGKIVEILGDNMGTGLAVDIALRTHDIPHTWPPK
VEEQVKDLSEDVPEAAKKGRVDLRKLPLVTIDGEDARDFDDAVYCEQKRGGGWRLWVAIA
DVSYYVRPNTALDHEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
AQGKLSSYKFYEAVMSSHARLTYTKVWNILQGDAELREHYKPLVGGLEELHHMYKALEHA
REVRGGIAFETEEAKFIFNAERRIDRVEAVVRNDAHKLIEECMILANISAARFVEKNEEP
ALFRVHDQPSEDHVLALRSVLGELGLTLKGGMKPQPKDYAELMNEVAERPDREMLQTMLL
RSMKQAIYDPENRGHFGLALTSYGHFTSPIRRYPDLSLHRAIKYLLSDRHERWTSTGGWH
SDINEMLQLGMHCSMTERRADEATRDVADWLKCDFMQDHVGEVFTGIIASVTGFGFFVRL
KDLFIDGLVHVSTLDNDYYRYDNIGQRLIGESRGQVYRLGDEVEIRVEAVHMDERNIDFA
LVSSTRKVRGEGKTARDRTKKPESREAKPSRRRRSPSKAAANFEPDAAFRKEGDRSATAD
KPKVKPKKNRDKAKKNAEKTRKIAAATKAKRAKKKSAE
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcttggaacgagaagcagaaaaatacgaatcccctatccctagc
cgtgaatatattttggcgcacatcgccaagcgcgataccccgatcggtcgggaagaattg
gccgccgacctgcaattaaccggagaagaagccctcgaagcgctgcgccgccgtttgcgt
gccatggagcgcgatggtcagcttatttttacccgccgccaatgctatgcgttgccggaa
aagctcgatctcttgcgtggtacggtgatcggccaccgcgatggcttcggcttcctgcgt
gtggaaggccgcaaagacgatctttatctgtcggctgaagagatgaaacgggcgattcac
ggcgatgttgtgctggcgcagccgctgggtgcggatcgtaaaggacgccgcgaagggcgt
attgtacgtgtgctagagccgcgtaccggacaaattgtcggccgctattttgtcgatgcc
ggtgtcgggttcgtcgtaccggatgatagccggctgagcttcgatattctgatcccgaaa
gaagaaattaacggcgctcgcatgggcttcgtggttgtagttgagctgacgcaacgcgca
acgcgccgcacgaaagcggtcggtaagatcgttgagatcctcggtgacaacatgggcacc
gggctggcggtggatattgccctgcgtacccatgatattccgcacacctggccgcctaaa
gtcgaggagcaggtgaaggatctttccgaagacgtgccggaagcggcgaagaaaggtcgt
gtggatctgcgtaagctgccgctggtcacgattgacggcgaagatgcccgcgattttgat
gacgccgtatactgtgaacagaaacgtggcggcggctggcgtttgtgggtcgcaattgcg
gacgtgagctattacgtgcggccgaatacggcgcttgaccatgaagcgcgggcgcgtggt
acatcggtgtacttcccgtcgcaggtcgtgccgatgctgccggaagtgctgtcgaacggg
ctgtgttcgcttaacccacaggttgatcgcctgtgtatggtctgtgaaatgactgtctcg
gcgcagggcaagctgtcgtcctacaaattctatgaagcggtgatgagttcacacgcgcgt
ctgacctacaccaaagtgtggaacattctgcaaggcgatgccgagctgcgtgagcactac
aaacctttggttggtgggctggaagagctacaccacatgtataaagcgttggaacacgcg
cgtgaagtacgtggtggcatcgcgtttgagaccgaagaagcgaagtttattttcaacgcc
gaacgccgtatcgaccgtgtggaagccgtagtgcgtaatgacgcacacaagctaatcgaa
gaatgcatgattctggcgaatatctccgccgcaagatttgtggagaaaaacgaagagcct
gcgttgttccgcgtacacgatcagccgagcgaagaccatgtattagccctgcgtagcgtg
ctgggcgaactggggctgacgctgaaaggcggaatgaagccacagccgaaagactacgcg
gaattgatgaacgaagtggcggagcgtcccgatcgggaaatgctgcaaaccatgctgctg
cgttcaatgaaacaggcgatttatgatccggaaaaccgcggtcacttcgggctggccttg
acgtcttacggccacttcacgtcgccaattcgtcgttatcctgatctgtcgttgcaccgt
gcgattaagtatctgttgagcgatcgtcatgagcgttggacgtcaacgggcggttggcat
agcgatattaatgagatgctacagttgggcatgcactgctcgatgacagagcgccgtgcg
gatgaagccactcgcgacgttgcggactggctgaaatgcgactttatgcaggatcatgtg
ggtgaagtctttacggggattatcgccagtgtgaccggttttggcttctttgtgcgcctg
aaagatctgtttatcgatgggctggtacacgtttctacgctggataatgactactaccgt
tacgataatatcggtcagcgactgatcggtgaatcgcgcgggcaggtttatcgtctgggt
gatgaagtagaaatccgcgttgaagctgtgcatatggacgaacgcaacattgatttcgcc
ttggtttccagtactcgcaaggtgcgcggcgaaggtaaaaccgcacgtgaccggacgaag
aaaccagagtcgcgtgaggcgaagccaagtcgacgtcgtcgtagcccaagcaaagccgcc
gcaaactttgaaccggatgctgcattccgcaaagaaggcgatcgcagcgcgacggcggat
aaacccaaagtgaagccgaagaagaaccgcgataaagcgaaaaagaacgcagaaaaaacg
cgtaaaattgccgccgcgaccaaggctaaacgcgcgaagaaaaagtctgcggagtaa
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