Pectobacterium wasabiae: A7983_11565
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Entry
A7983_11565 CDS
T04535
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pws
Pectobacterium wasabiae
Pathway
pws03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pws00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7983_11565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pws03019
]
A7983_11565
03009 Ribosome biogenesis [BR:
pws03009
]
A7983_11565
Enzymes [BR:
pws01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A7983_11565
Messenger RNA biogenesis [BR:
pws03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A7983_11565
Ribosome biogenesis [BR:
pws03009
]
Prokaryotic type
rRNA helicases
A7983_11565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AOR63884
LinkDB
All DBs
Position
2546867..2548765
Genome browser
AA seq
632 aa
AA seq
DB search
MTDLLISFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
ALPLLNNLKPELKAPQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAT
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDIET
LAAALLKMAQGERPLILPPDPAFRPRREFRDRDESRSDSRGDRRRDPRDSRESRDGDRPQ
RRERRESGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKG
MPGDLLSHFTRTRILNKPMNMQLLGDAVAQPERRGGGRPAGAGGERRDGAAPRRSFGGGE
RREGNGNGGERRERSFNRDAAPRAPRRRPADA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttacttatttctttttctgatttggggctgtctgctcctattattaatgcc
ctgaccgatctgggctatgaaaaaccatcgccgattcaggctgaatgtattcctcacctg
ctgaacggtcgtgatgtgctaggtatggcacagaccggcagtggtaaaactgcggctttt
gctctgccattactcaataatttaaaacctgagttaaaagcaccgcagatgctggtgttg
gctccaacccgtgagctggccgttcaggttgctgaagcctgtaatgattttgctaaacat
atgcacggcgttaacgttgttgccctgtacggcggccagcgttatgacgttcaactgcgc
gctttgcgtggtggggcacagatcgttgttggtactcctggtcgtctgctggatcacctg
aaacgcggtacgctggatctgtccaacctgagtggtttggtactggacgaagcagatgaa
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggctcagatccctgctacg
catcagactgcgctgttctctgcaaccatgccggaagcgattcgccgtattacgcgccgt
ttcatgaaagatccacaggaagttcgtatccaatcaagcgtgactacgcgtccagacatc
agccagagctactggacggtgcagggtatgcgtaaaaatgaagcgttggtacgtttcctg
gaagcagaagattttgatgcggcgattattttcgttcgtaccaagaacgcaacgctggaa
gtggctgaagcgctggaacgcagtggttacaatagtgcagcgctgaacggtgacatgaat
caggcactgcgtgagcaaacgctggagcgtctgaaagatggtcgtctggatatcctgatt
gcgaccgacgttgcggcacgtggtctggacgttgagcgtatcagtctggtagtgaactac
gatatcccgatggatgccgagtcttacgtccaccgtattggccgtaccggtcgtgctggt
cgtgcaggtcgtgcactgctgtttgtagaaaaccgcgagcgtcgcctgttgcgcaacgtt
gaacgtacaatgaagctgacaattcctgaagtggaattgccaaatgcggaattactggga
caacgtcgcttggctaagtttgccgctaaagtacagcagcaactggaaagcagcgatctg
gacatgtaccgcgcgctgttgacgaagctgcaaccgcaggaagagctggatatcgaaact
ctggctgccgcgctgttgaaaatggcacagggcgaacgtcctctgattctgccaccggat
ccagcattccgccctcgccgcgaattccgcgatcgtgatgagtctcgtagtgattcacgt
ggcgatcgtcgccgcgatccgcgtgattctcgcgaaagccgtgacggtgaccgtccacag
cgtcgtgagcgtcgtgagtcgggtgagatggaactgtatcgtatcgaagtgggtcgcgat
gacggtgttgaagttcgccacattgttggtgctatcgccaacgaaggggatatcagcagc
cgctacattggtaacatcaagctgttcgggtctcactcaacgatcgaactgccgaaaggt
atgccgggcgacctgttatcacactttacccgcacgcgtattctgaacaaaccaatgaat
atgcaattgctgggtgatgcagtcgcacagccagaacgtcgtggcggtggccgtcctgct
ggcgcgggtggcgagcgtcgtgatggcgcagctccacgtcgctctttcggcggtggtgaa
cgccgtgaaggcaatggtaatggcggtgagcgtcgcgaacgttctttcaatcgtgatgct
gccccacgtgctccacgtcgtcgtcctgctgacgcgtaa
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