Pseudomonas wayambapalatensis: HU734_000135
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Entry
HU734_000135 CDS
T08016
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pwy
Pseudomonas wayambapalatensis
Pathway
pwy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU734_000135 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pwy03021
]
HU734_000135 (rho)
03019 Messenger RNA biogenesis [BR:
pwy03019
]
HU734_000135 (rho)
Transcription machinery [BR:
pwy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HU734_000135 (rho)
Messenger RNA biogenesis [BR:
pwy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HU734_000135 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
QXI43235
LinkDB
All DBs
Position
complement(24498..25757)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNHRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NKSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgacagaactcaagcaaaagccgattaccgatctgctggaaatggccgaacag
atgggcatcgaaaacatggcccgttcgcgcaagcaggacgtgattttcgccctgttgaaa
aaacacgcgaagagcggcgaagagatctcgggtgacggcgtgctggagattctccaggat
ggattcggtttcctgcgttcggcagatgcctcgtatctggccggccctgacgatatctac
gtctcgcccagccagatccgccgcttcaacctgcgcaccggcgacaccatcgtcggcaag
atccgcccgccgaaggaaggggagcgttacttcgccctgctgaaggtcgataccatcaac
ttcgaccgtccggaaaacgcgaagaacaagatcctgttcgaaaacctgacgccgctgttc
ccgaaccatcgcctgaagatggaagccggtaacggttccaccgaagacctcaccggccgt
gtcatcgacctgtgcgcgcctatcggcaaaggccagcgcggcctgatcgtcgctccgccg
aaagcgggcaagaccatcatgctgcagaacatcgcggccaacatcacccgtaacaacccc
gagtgccacctgatcgtcctgctgatcgacgagcgcccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtcgcctcgaccttcgacgagccgccgacccgccacgtg
caggttgccgaaatggtgatcgaaaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctcgactccatcacccgtctggcgcgtgcctacaacaccgtgatcccgagc
tccggcaaggtcctgaccggtggtgtcgacgcccacgccctggaaaagcccaagcgtttc
ttcggtgctgcccgtaacatcgaggaaggcggctcgctgaccatcatcgccaccgcgctg
gtcgagaccggctcgaagatggacgaggtcatctacgaagagttcaagggtaccggcaac
atggagctgccgctggaccgccgcatcgccgagaagcgtgtgttcccggccatcaacatc
aacaagtctggcacccgccgcgaagagctgctgactgccgacgacgagctgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggatgaagtggcggccatcgagttcctcatc
gacaagctcaagcagaccaagaccaacgatgagttcttcctgtcgatgaagcgcaagtaa
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