Pseudomonas wayambapalatensis: HU734_005515
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Entry
HU734_005515 CDS
T08016
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pwy
Pseudomonas wayambapalatensis
Pathway
pwy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU734_005515 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwy03019
]
HU734_005515 (rhlB)
Enzymes [BR:
pwy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU734_005515 (rhlB)
Messenger RNA biogenesis [BR:
pwy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU734_005515 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
DUF7464
Motif
Other DBs
NCBI-ProteinID:
QXI44238
LinkDB
All DBs
Position
complement(1275350..1276810)
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AA seq
486 aa
AA seq
DB search
MLKALKKIFGKGDAAPQAVAPAAPVIAPTPQPAPARPPKPPRAKSAPRSQPEPVAKAEAA
PAEQPPREKPRRERKPKPQASLWKPEDFVVEPQEGKTRFHDFKLSNELMHAIHDLGFPYC
TPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAP
TRELVVQIAKDAEALTKYSGLNVMSFVGGMEYDKQLKALENRYCDILVATPGRLLDFQQR
GEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAKQ
WTTDPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRR
IEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHVINF
TLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEELLGRKIKCEMPPDELLTA
VPRKHH
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaggcactcaagaaaatattcggcaagggagacgccgccccgcaggccgtcgcg
cccgctgcccccgtgattgcacccacgcctcagcccgcaccggcccggcccccgaaaccg
ccaagagcgaagtccgcgccgcgcagccagcccgaacctgtggccaaggccgaagccgcg
cctgccgagcagccgccccgggaaaagccccgccgcgagcgcaaacccaaaccccaggcc
agcctgtggaaacccgaggacttcgtggtcgagccccaggaaggcaagactcgcttccac
gacttcaagctctccaacgagctgatgcacgccatccacgacctgggcttcccctactgc
acgccgatccaggcccaggtcctgggttacaccctgcgtggccaagacgccatcggccgg
gcccagaccggcaccggcaagaccgccgcgttcctgatctcgatcatctcgcagctgcag
cagaccccgccgcccaaggagcgctacatgggcgagccgcgtgcgctgatcatcgccccg
acccgcgaactggtggtgcagatcgccaaggacgccgaggccctgaccaagtacagcggg
ctgaacgtgatgagcttcgtcggcggcatggagtacgacaaacagctcaaggccctggaa
aatcgctactgcgacatcctggtcgcgaccccgggccgcctgctggacttccagcaacgc
ggcgaagtgcacctggacatggtcgaggtgatggtgctggacgaagccgaccgcatgctc
gacatgggcttcatcccgcaggtacgccagatcatccgccagaccccgcccaagagcgaa
cgccagaccctgctgttctccgccaccttcaccgacgacgtcatgaacctggccaagcag
tggaccactgacccggccatcgtcgagatcgagccggagaacgttgccagcgagacggtc
gagcagcacgtctacgccgtggcgggcagcgacaagtacaagctgctgtacaacctggtc
acgcagaacaagtgggaacgggtgatggtcttcgccaaccgcaaggacgaggtgcggcgc
atcgaggaaaagctggtgcgcgacggcatcaatgccgcccagctgtcgggcgatgtgccg
cagcacaagcgcatccgcaccctggaaagcttccgcgaagggcgcatcaccgtgctggtg
gccaccgacgtggccgggcgtgggatccatatcgacggcatcagccacgtgatcaacttc
accctgccggaagacccggacgactacgtgcaccgcattggccgtaccgggcgtgcaggc
accagtggtgtgtcgatcagcttcgccggcgaggatgactcctaccagttgccggcgatc
gaggaactgctggggcgcaagatcaagtgcgagatgccgccggatgaattgctcacggca
gtgccgcgcaagcatcactga
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