Pseudomonas wayambapalatensis: HU734_006045
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Entry
HU734_006045 CDS
T08016
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pwy
Pseudomonas wayambapalatensis
Pathway
pwy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pwy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HU734_006045 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pwy03400
]
HU734_006045 (sbcB)
Enzymes [BR:
pwy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
HU734_006045 (sbcB)
DNA repair and recombination proteins [BR:
pwy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HU734_006045 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HU734_006045 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HU734_006045 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QXI44336
LinkDB
All DBs
Position
1385588..1387024
Genome browser
AA seq
478 aa
AA seq
DB search
MNSSIFWHDYETTGINPRCDRPLQVAGVRTDFELNEIDEPVNLYCRPSDDILPHPAACLV
TGITPEQLMAKGLGEAEFMTRVHEQLSRPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR
EWQGGNSRWDLIDVVRTAYALRPEGIVWPQQDGRTSLRLELLSKANKIDHGHAHEALSDV
RATIALARLVRQRQPKLYDWLFQLRSKHKVMEQIRLLQPLVHISGRFSSERSYLGVVLPL
AWHPRNRNALIVCDLHMENSPLIRESAEVLRSRLYTRREELADGELPVPLKLVHINKCPV
VAPLSVLRPADQQRLGLDMSLVQSRADQLIQQQDAWRDKLESLYSADEFAPSEDPEQQLY
EGFLGDRDRRLCEQVRLSDPRQLGQGHWMFDDARMPELLFRYRARNFIDTLNEQEQQRWH
RFCQQRLSDPRLGAPNTLGDFEQAAQARLVDTDDAGRQVLEAWLAHVRTLRTHYALAE
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
gtgaactccagcatcttctggcacgactacgaaaccaccggtatcaatccgcgctgcgac
cgaccgctgcaggttgcaggcgtacgcaccgatttcgagctcaacgagatcgacgaaccg
gtcaacctgtattgccgcccctccgacgatatcctgccgcaccccgccgcctgcctggtg
acgggcatcacccctgagcaactgatggcaaaaggcttgggggaagcggagttcatgacc
cgggtgcatgaacagttgtcgcgccccggcacctgtggcgcaggctacaacaccttgcgc
ttcgatgatgaagtcacccgctacagcctctaccgcaacttcttcgatccctacgcccgt
gagtggcagggtggcaacagccgctgggacttgatcgacgtggtgcgtaccgcctatgcc
ctgcgcccggaaggtatcgtctggccgcagcaggacggacgcaccagcctgcgcctggag
ttgctgagcaaggccaacaagatcgatcacggccatgctcacgaggcattgtccgatgtc
cgcgccaccatcgcgttagcccgcctggttcgccaacgccagcccaaactctatgactgg
ttgttccagttgcgtagcaagcacaaggtcatggagcagattcgcctgcttcagccactg
gtgcatatctccgggcgtttctccagcgagcgtagttacctgggggtggtattgccgttg
gcctggcacccgcgtaatcgcaatgcactgattgtgtgcgacctgcacatggaaaactcg
cctttaataagggaaagtgccgaggtattgcgttcgcgtttgtacacgcggcgcgaggaa
ttggctgacggggaattgccggttccgctgaagttggtgcacatcaacaaatgtcctgtg
gttgcgccattgagcgtattgcgcccggccgatcaacagcgactgggtcttgatatgtcg
cttgttcagtctcgagccgatcaattgattcagcagcaagacgcttggcgggacaagctg
gagagcctctacagcgcagatgagttcgcacccagcgaagatcccgagcaacagttgtac
gagggatttctcggggatcgtgatcgtcgcttgtgtgaacaagttcgtttgagcgatccg
cgacagttggggcaggggcactggatgttcgatgatgcacgcatgcctgagctattgttc
cgctaccgggcgcgcaactttatcgacaccttgaacgaacaggagcaacaacgctggcac
cgcttctgccagcagcgcctgagcgatccgcgcctgggagcgcccaacaccctgggcgat
ttcgagcaggcggcgcaggcccgtctggtcgatacggacgatgccgggcggcaggtcctg
gaggcatggcttgcacatgtccgtacactgcgaacgcactatgcgttggcagaataa
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integrated database retrieval system
