Pseudomonas wayambapalatensis: HU734_006485
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Entry
HU734_006485 CDS
T08016
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pwy
Pseudomonas wayambapalatensis
Pathway
pwy03030
DNA replication
pwy03430
Mismatch repair
pwy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pwy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU734_006485 (dnaE)
03430 Mismatch repair
HU734_006485 (dnaE)
03440 Homologous recombination
HU734_006485 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pwy03032
]
HU734_006485 (dnaE)
03400 DNA repair and recombination proteins [BR:
pwy03400
]
HU734_006485 (dnaE)
Enzymes [BR:
pwy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HU734_006485 (dnaE)
DNA replication proteins [BR:
pwy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HU734_006485 (dnaE)
DNA repair and recombination proteins [BR:
pwy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HU734_006485 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
HROB
Motif
Other DBs
NCBI-ProteinID:
QXI44421
LinkDB
All DBs
Position
1485915..1489439
Genome browser
AA seq
1174 aa
AA seq
DB search
MSVSFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAG
IKPICGADLWLAGADPEAPLSRICFLAMNPRGYRNLTELISKGWTEGQRNGLVIIQREWI
APASEGLIGLSAAREGDIGMALLSGRSDEAEALLRDWMQMLPERFYVEVQRTNRAGDEEY
LHAAVALADKVGAPLVATNDVRFIKQTDFDAHETRVCIGEGWTLDDPRRPRGYSDQQYLK
SAEEMAELFSDLPDAIANTVEIAKRCNITVQLGKYFLPDFPTPNGMSIDDYLRHVSHEGL
EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYV
AEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQKKKDLPDVNIDFIPLDDRKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNDDGRIVYGLGAI
KGVGEGPVEAIVEARAEGGPFKDLFDFCERVDLKRINKRTLDALIRSGALDRLGPHFHDE
IKAYQANIDRNRAVLLSALEEAIKSAEQTARTADSGHIDLFGGLFVEEDSDVYANHHKVR
ELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQTIAGMIIALRV
MKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQALLQTDAMVVVEGEVSNDDFSGGLRL
RVKQVMTMEDARTKLAESLRLKIAHEALKGDRLAWLGELITRHRGGCPITLEYTGSDAKA
MLQFGDEWSIDPADGLIQALRDQFGRENVFLQYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtctccttcgttcacctccgtgtgcactccgagttctccctggtcgatggtctg
gtgcgcatcaagccgctggccaaggccctggccggaatgaacatgccggcggtggcgatc
accgaccagagcaacatgtgctcgctggtgaagttctacaagaccgccatgggcgcaggg
atcaagccgatctgcggcgccgacctgtggctggccggtgccgatccggaggcaccgctg
tcgcgtatctgcttcctggccatgaacccccggggctatcgcaacctcaccgagttgatc
tccaagggctggaccgaaggccagcgcaacggcctggtgatcatccagcgtgaatggatc
gcgcccgccagcgagggcctgattggcttgtctgcggcgcgcgagggcgatatcggcatg
gcgctgctctccggtcgcagcgacgaggccgaggccttgctacgcgactggatgcagatg
ctgccggagcgcttctatgtagaagtgcagcgcaccaatcgcgcaggcgacgaagaatac
ctgcacgctgccgtggccctcgccgacaaggtcggcgcgccgctggtggcgaccaacgat
gtacgcttcatcaaacagaccgacttcgacgcccacgagacccgcgtctgcatcggcgag
ggctggaccctggacgacccgcggcgcccgcgcggctacagcgatcagcagtacctgaag
tcggccgaggagatggccgagctgttcagcgacctgccggacgcgatcgccaacactgtc
gagatcgccaagcgttgcaacatcacggtgcagttgggcaagtacttcctcccggatttc
ccgacgcccaacggcatgagcatcgacgattacctgcgccacgtctcccacgagggcctg
gaagaacgtctggccgtgctctggccgaaagagaccacgcccaattacgaagagaaacgt
caggtctacctggaccgcctgaagttcgagctggatatcatcatccagatgggcttcccc
ggttacttcctgatcgttatggacttcatcaagtgggccaagaacaacgacgtgccggtg
gggccgggccggggttcgggggcgggttcgttggtggcctacgtgctgaagatcaccgac
ctcgacccgctggcttatgacctgctgttcgagcgcttcctcaaccccgaacgtatttcc
atgcccgacttcgacgtcgacttctgcatggatggtcgcgaccgggtgatcgactacgtg
gccgaggcctatgggcgcaatgcggtcagccagatcatcaccttcggcaccatggccgcg
aaggcggtggtgcgtgacgtggcgcgtgtgcagggcaagtcctacggcctggccgaccgc
ttgtcgaaaatgatcccgttcgaagtgggcatgaccctggagaaggcctacgagcaggaa
gagatcctgcgcgacttcctcaagggcgatgaagacgctcgcgagatctgggacatggcg
ctcaagctcgagggggtcactcgcggtaccggtaagcacgccggtggtgtggtgatcgcg
ccgaccaaactcaccgatttctcgccgatcgcctgtgacgaagagggcggcggcctggtg
actcagttcgacaaggacgacgtcgaggctgcgggcctggtgaagttcgacttcctcggc
ttgcggacgctgacgatcatcaagtgggcgatggagatcatcaaccgcgagcagaaaaag
aaagacctgcccgacgtcaacatcgacttcatcccgctggacgaccgcaagacctacgag
ctgttgcagaaggccgagaccacggcggtgttccagcttgaatcgcgcggcatgaaagag
ctgatcaagaagctcaagcccgactgcctggaagacctcatcgcactggtggcgttgttc
cgccccggcccgctgcagtcgggcatggtggacgacttcatcaaccgcaagcacggccgc
gcggagctggcctatccgcactccgattaccagtacgaaggcctcaagccggtactggcc
cccacctacggcatcatcctgtatcaggaacaggtgatgcagatcgcccaggtgatggcc
ggctacaccctgggtggcgccgacatgctgcgtcgggccatgggcaagaagaagccagag
gaaatggccaagcaacgcggcggtttcatcgaaggttgcgtggccaataacatcgatgca
gaccttgccggtaacatcttcgacctggtagagaagtttgccggttacggcttcaacaag
tctcactccgcagcctatggcctggtctcgtaccagaccgcctggctcaagacccactac
ccggcgccgttcatggctgcggtattgtcggcggatatgcacaacaccgacaaggtggtg
gtgctggtcgaggaagtgcgcagcatgaagctgcgcctcgatgcgccggacgtgaacttc
tccgacttcaagttcaccgtcaacgacgacggtcgtatcgtctatggcctgggtgcgatc
aagggggtgggtgaaggcccggtggaggcgatcgtcgaggcgcgcgccgaaggcggcccg
ttcaaggacctgttcgacttctgcgagcgcgtcgacctcaagcgcatcaacaagcgcacc
ctcgatgccctgatccgcagcggtgcgctggaccggttggggccgcacttccacgacgag
atcaaggcctaccaggccaacatcgaccgcaaccgcgcggtgttgctgtcggcgctcgaa
gaggcgatcaagtcggccgagcagaccgctcgcaccgctgacagcggccatatcgacctg
ttcggtgggctgttcgtcgaagaggattccgatgtctatgccaaccaccacaaggtccgc
gagctcacgctcaaggagcgcctgaaaggcgaaaaggataccctcgggctatatctcacc
ggtcacccaatcgatgagtacgaaaccgagatccgccgtttcgctcgccagcgcatcgtt
gacctcaagccttcacgcgagacccagaccatcgcggggatgatcattgccctgcgggtg
atgaagaacaagaagggtgacaaaatgggcttcgtcaccctcgacgaccgctccggtcgt
atcgaggcctcgctgttcgccgatgccttcatggcggcccaggcgctgctgcagaccgac
gcgatggtggtggtcgaaggcgaggtcagcaacgacgacttctccggcggcctgcgcctg
cgcgtcaagcaggtgatgaccatggaggatgcccgcaccaagctggccgaaagcctgcgc
ctgaagatcgcccacgaagcactcaagggagatcgcctggcctggctgggcgagctgatc
acccgtcatcgcggcggttgcccgatcacgctggagtacaccggcagcgatgccaaggcc
atgctgcagttcggcgacgagtggtcgatcgatcccgctgatggcctgattcaggcgctg
cgtgaccagttcggacgtgagaacgtcttcctgcaataccgttga
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integrated database retrieval system
