Pseudomonas wayambapalatensis: HU734_018690
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Entry
HU734_018690 CDS
T08016
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pwy
Pseudomonas wayambapalatensis
Brite
KEGG Orthology (KO) [BR:
pwy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwy03019
]
HU734_018690 (hrpA)
Enzymes [BR:
pwy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HU734_018690 (hrpA)
Messenger RNA biogenesis [BR:
pwy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HU734_018690 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
AAA_25
T2SSE
ResIII
NACHT
AAA_30
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QXI42261
LinkDB
All DBs
Position
complement(4213978..4217883)
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDKLLQNLDHAMIADRHRLRRQLHELRKRPDEGKLAQWVEKVQASCAQVTARQQS
VPSIRYDDNLPIAAKRDEIKKALSEHQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAH
TQPRRIAARSVAARVAEELGTPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSKHFDGAPII
EVSGRTYPVDTWYRPLTSEQDEEGNQVEDDLTVDQAILATLDEIAQHERSQGKGPGDVLV
FLPGEREIRDAAEILRKAQLRHTEILPLYARLTPAEQQKIFQSHSGRRVVLATNVAETSL
TVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSED
DFNGRPAFTDPEILRTNLAAVILQMLHLRLGEIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPLGRQLARLPIDPRLGRMLLEGARQGSLQEVLIVASALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKQFLNYLRLREWRDAHRQ
LSLICRDLQLAVNKEASDYQRMHKAILSGLLSQIGHKTEEGDYQGARQRRFWVHPSSGIG
RKRPQWVMAAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQ
ITLYGLILVGRRPVHFGPIDPVTSRELFIREGLVGGEIQSRAKCLSANKRLLEQLDELEA
KARRRDILADEETLYAFYEARLPEEIHQTATFDSWYRMNSQKDANLLIMREEDVLAREAS
EVTAAQYPDHLQVGDLRLPLSYHFEPNHPRDGVTVRVPAPLLPNLPGERLEWLVPGLLEA
KCVALVRNLPKALRKNFVPVPDFVKAALSRMSFGQGALPQALGQELLRMTGARVSDEAWA
ESAGQVEGHLRMNIEVVDGQGKFLGEGRDLAELTARFAAASQAALALPRSEKTEQPVQAK
AFAQVAQTAQQKIAGLSLTVYPALVEDNGAVREGRFSTQAEAEFQHRRALQRLLLQQLAE
PAKFLRGKLPGLTELGLLYRELGRVESLVEDILLASLDSCVLEGETPLPRDGAALASLAE
RKRGDWAEHAERLARQTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLGNLVYPGFVR
ETPAQWFKELPRYLKAIELRLEKLGSQVQKDRVWSGELGNLWTQYKTRADKHAQEGKRDA
ELTLYRWLLEEYRVSLFAQQLGTKVAVSDKRLSKQWSLVEA
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccacgccatcgacaaactgctgcaaaacctcgaccacgccatgatcgccgac
cgccatcgcctgcggcggcaactgcacgagctgcgcaagcgccccgacgagggcaagctg
gcgcagtgggtggagaaggtccaggcgtcctgtgcccaggtcaccgcgcgccagcagagc
gtgccgagcatccgctacgacgacaacctgcccatcgccgccaagcgcgacgagatcaag
aaggccctgtccgagcatcaggtgctggtgatcgccggcgaaaccggctcgggcaagacc
acccagttgccgaagatctgcctggaactgggccgcggcagtcatggcctgatcgcccat
acccagccacgccggatcgccgcgcgcagtgtggcggcgcgggttgccgaggagctcggc
acaccgcttggggcgctcgtcggttaccaggtgcgtttcgaggaccagagcgactcgaac
accctggtcaagctgatgaccgacggtatcctgctggccgaaacccagcacgaccgcttc
ctcgagcgctacgacacgatcatcgtcgacgaagcccacgagcgcagcctgaacatcgac
ttcctgctcggctacctcaagaccctgctacaccggcgccctgacctcaagctgatcatc
acctcggcgaccatcgacctggagcgcttctccaagcacttcgatggcgcgccgatcatc
gaggtgtccggccgcacctacccggttgacacctggtaccgcccgctgaccagcgagcag
gacgaggagggtaaccaagtcgaggatgacctcaccgtcgatcaggcgatcctcgccacg
ctggatgaaatcgcccagcacgagcgcagccagggcaagggcccgggcgatgtgctggtg
ttcctgcccggcgagcgcgagattcgcgatgccgccgaaatcctgcgcaaggcacaactg
cgccacaccgaaatcctgccgctgtacgcgcgcctgaccccggccgagcagcagaagatc
ttccagtcccacagtggccggcgcgtggtactggcgaccaacgtcgccgaaacctcgctg
accgtgccgggcatccgctacgtgatcgacagcggcaccgcgcgcatcagccgctacagc
taccgcgccaaggtccagcgcctgcccatcgaggcggtgtcgcaggccagcgccaaccag
cgtaaaggccgttgcgggcgggtcgagccggggatctgcatccgtctctacagcgaggat
gatttcaacggccgcccggccttcaccgaccctgagatcctgcgcaccaacctggcggcg
gtgatcctgcagatgctgcacctgcgcctgggcgagatcgacgcgtttccgttcatcgag
ccgccggatggcaaggccatcagcgacggcttcaacctgttgcaggagctctcggcggtc
aaccgcgagaaccagctcacgccgctgggccgccagttggcgcgcctgccgatcgacccg
cggctgggccgcatgctgctcgaaggtgcccgccagggcagcctgcaggaagtgctgatc
gtcgccagtgcgctgtcggtacaggacccgcgcgagcgaccgccagagcgccagcaggcc
gctgaccaggcgcacgcgcagtggaaggatgtcgattcggacttcgccgcgctggtcaac
ctgtggcgcggcttcgaggaacagcgccaggcgttgaccgccaacccgctgcgcaactgg
tgccgcaagcagttcctcaactacctgcgcctgcgcgagtggcgtgatgcgcaccgccag
ctgtcgctgatctgccgcgacctgcagttggcggtgaacaaggaagcctccgactaccag
cggatgcacaaggcgatcctcagtggtctgctcagccagatcggccacaagaccgaagag
ggtgattaccagggcgcgcgtcagcggcgcttctgggtgcacccctcgtccggcatcggc
cgcaagcgcccgcagtgggtgatggccgccgagctggtggaaaccaccaagctgtatgcg
cgcatggtcgccaagattgagccggactggatcgagccgctggccgggcatctgatcaag
aagaaccatttcgagccgcactgggagaagaagcgcggtcaggtggtcgcctatgagcag
atcacgctttatggcttgatattggtcggtcgtcgcccggtgcacttcggtccgatcgat
ccggtgacctcgcgcgagctgttcatccgcgaggggctggtcggtggcgagatccagtcc
agggccaagtgcctgtcggccaacaagcgcctgctcgagcagctcgacgagctggaagcc
aaggcccgccgtcgtgacatcctggccgacgaagagacactgtacgcgttctacgaggcg
cgcctgcccgaagagatccaccagaccgcgaccttcgacagctggtaccggatgaacagc
cagaaggacgccaacctgctgatcatgcgcgaagaggacgtgctcgctcgtgaggccagc
gaagtcaccgccgcgcagtacccggaccatctgcaggtgggcgacctgcgcctgccgctg
agctatcacttcgaacccaatcacccgcgtgacggtgtcaccgtgcgggtgcctgcgccc
ctgctgccgaacctgccgggcgaacgcctggagtggttggtgccggggttgctggaggcc
aagtgcgtggccctggtgcgcaacctgcctaaggccttgcgcaagaacttcgtgccggtg
ccggacttcgtcaaggcggcattgtcgcgcatgagcttcggccaaggtgccttgccgcag
gccctgggccaggagctgttgcgcatgaccggggcgcgggtgtccgacgaggcgtgggcc
gaatcggccggccaggtcgaagggcacctgcgcatgaacatcgaggtggtcgacggccag
ggcaagttcctcggcgaaggccgcgacctggctgagctgaccgcgcgtttcgccgccgcc
agccaggccgccctggcgttgccacgtagcgagaagaccgaacagccggtgcaggccaag
gccttcgcccaggtggcgcagactgcccagcagaagattgccggcctgtcgctgacggtc
tacccggcactggtggaagacaacggcgcggtgcgcgaggggcgtttctcgacccaggcc
gaagccgaattccagcaccgccgcgcgctgcagcgcctgttgctgcaacagctggccgag
cctgccaagttcctgcgcggcaagctgccggggctgacagagctggggctgctgtaccgc
gagctgggccgggtcgagtcgctggtcgaggatatcctgctggccagcctcgacagctgt
gtgctcgaaggcgagacgccactgccgcgcgacggcgccgcactggcctcgctcgccgaa
cgcaagcgtggcgactgggccgagcatgccgagcggctggcacgccagaccctggaagtg
ctcaagctgtggcatggcctgcagaagcgcttcaagggcaagatcgacctgagccaggcc
gtggcgctgaacgatatcaagcagcaactgggcaacctggtctacccaggcttcgtgcgc
gagacgccggcgcagtggttcaaggaactgccgcgctatctgaaggccatcgagctacgt
ttggagaagctgggctcgcaggtgcagaaggaccgggtctggagcggcgagctgggcaac
ctgtggacacagtacaagacccgcgccgacaagcatgcccaggagggcaagcgtgacgcc
gagctgaccctgtatcgctggttgctggaggagtaccgggtgtcgctgttcgcgcagcag
ttggggacgaaagtggcggtttccgataagcgattaagcaagcagtggagtttggtggaa
gcctaa
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integrated database retrieval system
