Pseudomonas wayambapalatensis: HU734_023660
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Entry
HU734_023660 CDS
T08016
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pwy
Pseudomonas wayambapalatensis
Pathway
pwy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pwy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HU734_023660 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pwy03021
]
HU734_023660 (rpoC)
03400 DNA repair and recombination proteins [BR:
pwy03400
]
HU734_023660 (rpoC)
Enzymes [BR:
pwy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HU734_023660 (rpoC)
Transcription machinery [BR:
pwy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HU734_023660 (rpoC)
DNA repair and recombination proteins [BR:
pwy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HU734_023660 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QXI43204
LinkDB
All DBs
Position
complement(5239803..5244002)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVKERDGSVVKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGTATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVVVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGDKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDANGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLVENERLASEDKFISKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggtgtgatctgtgagaagtgcggcgttgaagttgccctggccaaggttcgtcgtgag
cgcatggcgcacatcgagctggcctcgccggtcgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgactctgcgtgacatcgagcgcgtgctctac
ttcgagagctacgtggtgatcgatccgggcatgactaccctcgagaagggtcagctgctc
aacgacgagcagtacttcgaagcgctggaagagttcggtgacgacttcgacgcccgcatg
ggtgccgaggctgtccgcgaactgctgcacgcgatcgacctggagcacgagatcggtcgt
ctgcgcgaagagattccacagaccaactccgaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagctttccagggctcgggcaacctgcctgagtggatggtcctgacc
gtcctgccggtgctgccgccggacctgcgtccgctggttccgctggatggcggccgcttc
gcgacctccgacctgaacgatctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtcggcgccggacatcatcgtgcgcaatgaaaagcgcatgctgcag
gaagcggtcgacgccctgctcgacaacggccgtcgcggtcgtgccatcactggctcgaac
aagcgtccgctgaagtcgctggccgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacttgctcggtaagcgcgtggactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgcctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgccagaggtctgggacgttctcgccgaagtcatccgcgaacacccc
gtcctgctgaaccgtgcaccgacgctgcaccgtctgggtatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgattcagctgcacccgctggtctgtgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgaccctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccttcgcaggacgttgtactgggtctgtactacatgacccgtgaagccatcaacgcc
aagggcgagggtcgcgtgttcgctgacctgcaggaagtcgaccgcgtattccgcgccggc
gaggctgccctgcacgcgaaaatcaaggtccgtatcaacgagaccgtgaaagagcgtgat
ggctcggtggtcaagaacacccgtatcgtcgacaccaccgtcggccgtgcgctgctgttc
caggttgttccggcaggtctgccgtacgacgtggtcaaccagccgatgaagaagaaggcg
atctccaagctgatcaaccagtgctatcgcgtggttggtctgaaagagaccgtgatcttc
gctgaccagctgatgtacaccggtttcgcttactcgaccatttccggcgtctcgatcggt
gttaacgacttcgttatcccggacgaaaaagcccgcatcatcggtactgctaccgatgag
gtgaaggaaatcgaaagccagtacgcctcgggcctggttacccagggcgagaagtacaac
aaggtcatcgacttgtggtcgaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgagggcaaggaagtcgagcaagagtccttcaac
tcgatgtacatgatggctgactcgggtgcgcggggttccgctgcacagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgtgaaggtctgagcgtactgcagtacttcatctcgacccacggtgctcgt
aaaggtcttgcggataccgcactgaagactgcgaactccggttacctgactcgccgtctg
gtagacgtggcgcaggatctggtcgtgaccgagatcgactgcggcaccgaccagggcctg
ctgatgacgccgcacatcgaaggtggcgacgttgtagagccgctgggtgagcgtgtactg
ggtcgtgtcatcgcccgcgacgtgttcaagccaggtaccgaggacgtcatcgttcctgcc
ggcacccttgtcgacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
gtcgtgcgttcgccgatcagctgcgaaacccgctacggcatctgcgccaagtgctacggt
cgtgacctggctcgtggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgca
cagtcgatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgct
gcaagccgtacctcggctgccgacagcgtccaggtgaagaatggcggcatggtgcgtctg
cacaacctgaagcaggtcgagcgtgccgatggcaacctggtcgcggtatcgcgttccggc
gagctggccattgccgacgaattcggtcgtgaacgtgagcgttacaagctgccttacggt
gcggtgatttcggtcaaggaaggtgacaaggtcgaagctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgttaccgaactgaaaggtaccgtgaccttcgtgggcatg
gaagaaaacatcaccatcaagcgccagaccgacgaactgaccggtctgaccaacattgaa
gtcctggacgtcaaggatcgccctgccgctggcaaggaaatccgtccggccatcaagatg
gtcgatgccaacggcaaggacctgtacctgccaggtacggacgtaccggctcagtacttc
ctgccggccaacgccctcgtcggtgtggctgacggtgcccagatcggtgtcggtgacgtt
attgcgcgtatcccgcaagaaacgtcgaagactcgtgacatcaccggtggtctgccacgc
gttgccgacctgttcgaagcgcgtcgtccgaaagaagcgtcgatcctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaagggcaagcgtcgcctggtcatcacgccgacc
gatggcagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagtcatctccgacggtccgagcgatccgcacgacatc
ctgcgtctgctgggtgtcagcgcgctggccaagtacatcgtcaacgagattcaggacgtt
taccgcctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgagatctccgagtccggcgattccagcttcatcaagggcgaccagatg
gagttgacccaggtactggtagagaacgagcgtctggcgagtgaagacaagttcatctcc
aagttcacccgtgtcctgctgggtatcaccaaggcctcgctgtcgaccgagtcgttcatc
tccgcggcttccttccaggaaaccacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgactacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcctaccacagcgagcgcaagcgtcgccgtgatgccgacaagccgctgcgt
gtgagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggcaactaa
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integrated database retrieval system
