Pseudomonas wayambapalatensis: HU734_023665
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Entry
HU734_023665 CDS
T08016
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pwy
Pseudomonas wayambapalatensis
Pathway
pwy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pwy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HU734_023665 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pwy03021
]
HU734_023665 (rpoB)
03400 DNA repair and recombination proteins [BR:
pwy03400
]
HU734_023665 (rpoB)
Enzymes [BR:
pwy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HU734_023665 (rpoB)
Transcription machinery [BR:
pwy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HU734_023665 (rpoB)
DNA repair and recombination proteins [BR:
pwy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HU734_023665 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QXI43205
LinkDB
All DBs
Position
complement(5244067..5248140)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEILDTFYTTNVFHVSGEK
LSLELVAQRLRGEVAVMDITDDTGKVIVEQGRRITARHINQIEKAGVKQLDVPLEYMIGR
TTAKAIVHPATGEILAECNTELTTDLLVKIAKAQVVRIETLYTNDIDCGPFIADTLKIDT
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSKEDIVDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVTDDIVFLSAIEEADHVIAQASAAMNEQKHLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
VVARGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDDVLNGLEHGQWFKLRMA
EDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKIDRMLEEQRKAAELRTFLTEIYNEIGGRQENLDEFSDAEIFALANNLKKGVPMATP
VFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtacctcctggccatccagctggattcgtatcgcgaattcctgcag
gcgggagcatccaaggatcagttccgcgacgtcggtctgcatgcggccttcaaatcggta
ttcccgatcatcagctactccggcaatgctgccctggagtacgtaggctatcgcctgggc
gagcctgccttcgatgtgaaggaatgtgtcctgcgtggcgtgaccttcgcggtcccactg
cgggtcaaggtgcgcctgatcatcttcgacaaggaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gttatcaacggtaccgagcgtgtgatcgtttcccagctgcaccgttcgcctggtgtgttc
ttcgaccacgaccgtggcaagactcacagctccggcaagctgctgtactccgctcgcatc
attccttaccgcggctcctggctcgacttcgagttcgatccgaaggactgcgtgttcgtc
cgtatcgaccgtcgccgcaagctgccggcctccgtactgctgcgcgccctgggctacagc
accgaagagatcctggacaccttctacaccaccaacgtgttccacgtttccggtgagaag
ctgagcctggagctggttgcccagcgcctgcgcggtgaagttgcggtcatggacatcacc
gacgacaccggcaaggtcatcgtcgagcaaggccgccgtatcactgcgcgccacatcaac
cagatcgagaaagctggcgtcaagcagctggacgttccgctcgagtacatgattggccgt
accactgccaaggccatcgtgcacccggcaactggtgaaattctggccgagtgcaacacc
gagctgaccaccgatctgctggtcaagatcgccaaggcccaggtcgttcgcatcgagacc
ctgtacaccaacgatatcgactgcggtccgttcatcgccgatacgctgaagatcgatacc
accagcaaccagctggaagcgttggtcgaaatctatcgcatgatgcgcccaggcgagccg
ccaaccaaggacgccgccgagaccctgttcaacaaccttttcttcagcgccgagcgttac
gacctgtccgcagtcggccgcatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgagcaaggaagacatcgtcgatgtactgaagaccctggtcgacatc
cgtaacggcaagggcatcgtcgacgacatcgaccacctgggtaaccgtcgtgtgcgttgt
gtcggcgagatggccgagaaccagttccgcgttggcctggtgcgcgtcgagcgtgcggtc
aaagagcgtctgtcgatggccgaaagcgaaggcctgatgccgcaggacctgatcaacgcc
aagccggttgcggcggcggtgaaagagttcttcggttccagccagctctcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgtcgtgtctctgcgctcggcccg
ggcggtctgacccgtgagcgcgcaggcttcgaagttcgtgacgtacacccgacccactac
ggccgcgtgtgcccgatcgagacgccggaaggtccgaacatcggtctgatcaactccctg
gcggcctacgcccgcaccaaccagtacggcttcctggaaagcccgtaccgtgtggtgaaa
gagggtgtggtcaccgacgacatcgtgttcctgtcggcgatcgaagaagctgatcacgtc
atcgcccaggcttcggctgcgatgaacgagcagaagcacctgatcgacgagctggtagcg
gtccgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgtt
tcgccgaagcaggttgtttccgttgctgcctctctgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgtaccgaccctgcgtgcc
gacaagccgctggtaggtactggcatggagcgcaacgtcgcccgtgactccggcgtctgc
gtcgtggctcgccgcggtggtgtgatcgactcggtcgacgccagccgtatcgtcgtgcgt
gtagctgatgacgaagtcgagaccggtgaagcaggtgtggatatctacaacctgaccaag
tacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgat
gtggtcgcgcgtggcgacatcatggccgacggcccgtccaccgacatgggtgaactggcg
ctgggccagaacatgcgcatcgcgttcatggcgtggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggtccaggaagatcgcttcaccacgatccacatccaggaa
ctgacctgtgtggcccgtgacaccaagcttggcccagaggaaatcaccgcggacatcccg
aacgtgggtgaggctgcgctgaacaagctggacgaagccggtatcgtctacgtaggtgcc
gaagtcggcgccggcgacatcctggtcggcaaggtcactccgaaaggtgagacccagctg
acgccggaagagaaactgctgcgtgcgatcttcggtgagaaggccagcgacgtcaaagac
acctccctgcgcgtgccgaccggcaccaaaggcaccgtcatcgacgtacaggtcttcacc
cgcgatggcgttgagcgcgacagccgcgccctggcgatcgagaagatgcagctggacgag
atccgcaaggacctcaacgaagagttccgcatcgtcgaaggcgcgaccttcgagcgtctg
cgttctgctctgaacggccaggtggtcgacggtggtgcgggcctgaagaaaggcaccgtg
atcactgacgacgtactgaacggtctggagcacggccagtggttcaaactgcgcatggcc
gaagatgcactgaacgagcagctggaaaaggctcagcagtacatcgtcgatcgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggct
ccaggcgtactgaagatcgtcaaggtttacctggcaatccgccgtcgcatccagccgggt
gacaagatggccggtcgtcacggtaacaagggtgtcgtctcggtgatcatgccggtagaa
gacatgccgcacgacgccaacggtactccggtcgacgtcgtactgaacccgctgggcgta
ccttcgcgtatgaacgtcggtcagattctcgaaacccacctgggcctggcggccaaaggt
ctgggcgagaagatcgaccgcatgctcgaagagcagcgcaaggcagccgagctgcgcacc
ttcctgaccgagatctacaacgagatcggtggtcgtcaggaaaacctcgacgagttctcc
gacgcagagatcttcgccctggccaacaacctcaagaaaggtgtgccgatggcgacgcct
gtcttcgacggtgccaaggagcgtgagatcaaggccatgctgaagctggccgacctgcca
gagagcggccagatggtgctgttcgacggccgtaccggcaacaagttcgagcgtcctgtg
accgttggttacatgtacatgctcaagctgaaccacttggtggacgacaagatgcacgcg
cgttccactggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaagtgtgggcgctggaagcatacggcgcggcatac
accctgcaagaaatgctcacagtgaagtcggacgacgtgaacggccgtaccaagatgtac
aagaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagagatccgttcgctcggtatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
