Pseudomonas wenzhouensis: J7655_10645
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Entry
J7655_10645 CDS
T07852
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pwz
Pseudomonas wenzhouensis
Pathway
pwz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J7655_10645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwz03019
]
J7655_10645
03009 Ribosome biogenesis [BR:
pwz03009
]
J7655_10645
Enzymes [BR:
pwz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J7655_10645
Messenger RNA biogenesis [BR:
pwz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J7655_10645
Ribosome biogenesis [BR:
pwz03009
]
Prokaryotic type
rRNA helicases
J7655_10645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
TrkA_N
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UFQ95807
LinkDB
All DBs
Position
2332227..2333921
Genome browser
AA seq
564 aa
AA seq
DB search
MTQEIGGFAALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAF
ALPLLSKVDTAKREPQVLILAPTRELALQVATAFETYSKQMPGLNVVAVYGGAPMGPQLK
AIRQGAQVIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEVIFEAMPES
RQSVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVLRLL
EVEDFDALIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVGEVKLPNAQQVLDARIKKLTSSLAPLVADAEANHGDLLDRLTADIGCSPRAL
AAALLKKATNGQALDLASVEREQPLVPGVGGAPRERRERDGERSERSGGERGEYRERRAP
LPLTEGRVRCRTALGTRDGIAAKNLLGAILNEGGLAREAIGRIQIRETFSLVELPEDGLD
RLLGKLKDTRVAGKALKLRRYRED
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgcgctcggacttcaccccaatattctcgccgct
ctgaccgccgttggttacgaagagccgtctccgattcagtcgcaggccattccggtaatc
cttgccggccacgacatgatcggccaggcgcagaccggcaccggcaaaactgccgcgttc
gcgctgccgttgctgtcgaaggtcgacacggccaagcgcgagccgcaggtgctgatcctg
gcaccgacccgcgagctggccctgcaggtcgccaccgcgtttgaaacctactccaagcag
atgcctggcctgaacgtcgtggctgtctacggtggtgcaccgatgggcccgcagctcaag
gccattcgtcagggcgctcaggtcatcgtcgctacgccgggccgtctggtcgaccacctg
cgtcgtgacgagaaagtgctgtccaccatccagcacctggtactcgacgaagccgacgaa
atgctcaagctgggcttcatggacgaccttgaagtgatcttcgaagccatgccggaaagc
cgtcagagcgtgctgttctccgccacgctgccgcactcgatccgcgccatcgccgagaag
cacctgcgtgagccgcaacacatcaagatcgcggccaagacccagaccgtctcgcgcatc
gagcaggcgcacctgatgattcacgccgaccagaagaccaacgccgtgttgcgtctgctg
gaagtcgaggacttcgacgcgctgatcgccttcgtacgcaccaagcaggccacgctggat
ctggccagcgccctggaagccaagggcttcaaggctgccgcgctgaacggcgatatcgcc
cagaaccagcgcgagcgcgtaatcgagtcgctcaaggatggtcgtctggatatcgtcgtc
gcgactgacgttgctgctcgtggtatcgacgtgccgcgtatcacccacgtgttcaacgtc
gacatgccgtatgacccggagtcctacgtgcaccgtatcggccgtaccggccgcgctggt
cgcgatggtcgtgcgctgctgctggtgacgccgcgtgagcgccgtatgctgcaggtgatc
gagcgtgtcaccgggcagaaggtcggcgaggtcaagctgccgaacgcccagcaggtgctt
gatgcacgcatcaagaagctcaccagcagcctggcgccgctggtagccgatgccgaagcc
aaccatggcgatctgctcgatcgcctgactgccgatatcggttgcagcccgcgcgcgctg
gccgctgcgctgctgaaaaaggccaccaatggccaggcactggatctggccagcgtcgag
cgcgagcagccgctggtgccgggcgttggtggcgcaccacgtgagcgccgcgagcgtgat
ggcgagcgttccgagcgtagcggtggtgagcgcggcgaataccgcgagcgccgtgcgccg
ttgccgctgaccgaaggccgcgtgcgttgccgcaccgccctggggacgcgcgacggtatt
gccgccaagaacctgctcggcgccatcctcaacgaaggcggcctggcccgtgaagccatt
ggccgtatccagatccgcgagaccttcagcctggtcgagctgccggaagatggcctggac
cgtctgctcggcaagctgaaagacacccgcgtcgctggtaaggcgctgaagctgcgtcgc
tatcgcgaggattga
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