Pseudomonas wenzhouensis: J7655_14220
Help
Entry
J7655_14220 CDS
T07852
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pwz
Pseudomonas wenzhouensis
Brite
KEGG Orthology (KO) [BR:
pwz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwz03019
]
J7655_14220 (hrpA)
Enzymes [BR:
pwz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J7655_14220 (hrpA)
Messenger RNA biogenesis [BR:
pwz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J7655_14220 (hrpA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
APHB_HrpA
DEAD
WHD_HA2
AAA_25
AAA_22
AAA_19
nSTAND3
nSTAND_NTPase5
NACHT
T2SSE
ABC_tran
AAA_23
Motif
Other DBs
NCBI-ProteinID:
UFQ96458
LinkDB
All DBs
Position
complement(3094826..3098869)
Genome browser
AA seq
1347 aa
AA seq
DB search
MTDLATLQKKLDHVMIAERHRLRRQLHELQKHPDEAKLAQWLARFQAASDKVAARRSSIP
AMRYDDALPIAAKRDEIKAALEKSQVVVIAGETGSGKTTQLPKICLEIGRGVHGLIGHTQ
PRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDGTLIKLMTDGILLAETQHDRFLE
KYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKLIITSATIDLERFSKHFNDAPIIEV
SGRTYPVETWYRPLAAEVDEEGERLLDDLSIDQGILAALDEIAEHERSVGQRPGDVLVFL
PGEREIREAAEVLRKANLRFTEVLPLYARLTPAEQQKIFAPMPGRKIVLATNVAETSLTV
PGIRYVIDSGTARISRYSYRAKVQRLPIEPVSQASANQRKGRCGRVEPGICIRLYSEEDF
LGRPEFTDPEILRTNLAAVILQMLHLRLGSIEDFPFIEPPDGKAISDGFNLLQELSAVNR
ESQLTPIGRQLARLPIDPRLGRMVLEGAKQGSLEEILIVAAALSVQDPRERPMDRQQAAD
QAHAQWKDVDSDFAALINLWRGFEEKRQELGSNPLRTWCKKNFLNYMRLREWRDAHRQLV
LIARELQLSGNASRRSPLAGDDGQADRPQAGSYKESVVPTKDTRVNAIARQQAEASEAAV
RAKNYAAVHKAILAGLLSQIGQKTEEGDYLGARQRRFWIHPSSVIGRKKPNWIMAAELVE
TTKLFARMVAKIEPDWIEPLAAHLVKKNHLEPHWEKKRGQVVAYEQVTLYGMIIVGRRPV
HYGPIDPPVAREMFIREGLVRGEINSRVRCLTANRQLLERLDELEAKSRRRDILADEETL
FGYYDARIPQDIYQAASFESWYKKGSAADAQLLIMREEDALARDAKEVTAAQYPDTLRIG
ELQLPLSYHFEPNHPRDGVTLRVPAPLLPQLQPERLEWLVPGLLEAKCIALVRGLPKALR
KNFVPVPDFVGAALDKLVFGQGSLPQALGHELLRMTGARVSDEAWAEAAEGIENHLKMNI
EVVDARGKFLGEGRDLAELTARFAEASQAALAIPQQSDKPKAVEAKAFAQVAEKTQQKIA
GLSMTVYPALVEEAGVVKEGRFPTQAEAEFQHRRALQRLLLQQLAEQAKFLRGKLPGLTE
LGLLYRDIGRIEVLVEDILLASLDACILEGEATLPRDGAALAQLAERKRGDWTAHAERIA
RQVLEILKLNHGLQKRFKGKIDLAQAMALNDIKLQLANLVYAGFVRETPGEWLKEIPRYL
KAIEQRLDKVGAQVQRDRVWTGELTGYWEQYKTRTAKHAQEGKRDPQLTLYRWMLEEYRV
SLFAQQLGTKMAVSDKRLSKQWTLVEG
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atgactgacctcgccacgctgcagaagaaactcgaccacgtcatgatcgccgagcgccat
cgcttgcgccggcagttgcatgagctgcagaagcaccccgacgaggccaagctggcgcag
tggttggcgcgtttccaggcggccagcgacaaggtggcggcgcggcgcagcagcatcccg
gcgatgcgttacgacgatgcgctgccgattgccgccaagcgtgacgagatcaaggccgcg
ctggagaagagccaggtggtggtgatcgccggtgagaccggttcgggcaagaccacgcag
ttgccgaagatctgcctggagatcggtcggggcgtgcatggcctgatcggtcatacccag
ccgcgccgtttggcggcgcgtagcgtggcgacgcgggtggcggaagagatcggcacgccg
ctgggtgagctggtcggctatcaggtgcggttcgaggatcagagcaaggacggcacgctg
atcaagctgatgaccgacggcatcctgctcgccgaaacccagcacgaccgctttctggaa
aaatacgacaccatcatcgtcgacgaggcgcacgaacgcagcctcaacatcgacttcctg
ctcggctacctgaagaccctgctgccgcgccgcccggatctgaagctgatcatcacctcg
gcgaccatcgatctggagcgcttttccaagcatttcaacgacgcgccgatcatcgaggtg
tccggtcgcacctatccggtggaaacctggtatcgcccgctggcggccgaggtggacgag
gagggcgagcgtctgctcgatgacctgtccatcgaccagggcattctcgctgcgctggac
gagatcgccgagcacgagcgcagcgtgggccagcgtcctggcgacgtgctggtgttcctg
cccggcgagcgcgagattcgcgaggccgccgaggtgctgcgcaaggccaatctgcgtttt
accgaggtgctgccgctgtatgcgcggctgacgccggccgagcagcagaaaatttttgcg
cccatgccggggcgcaagatcgtgctggccaccaacgtcgccgagacctcgctgaccgtg
ccgggcatccgctatgtgatcgattcggggacggccaggatcagccgctacagctaccgc
gccaaggtgcagcgcctgcccatcgagccggtgtcgcaggccagcgccaaccagcgcaag
ggccgttgcgggcgggtcgagccgggcatctgcattcgtctgtacagcgaggaggatttt
ctcgggcgccctgaattcaccgacccggagattctgcgtaccaacctcgcggcggtaatc
ctgcagatgctgcacctgcgcctgggcagcatcgaggactttccctttatcgagccgcca
gacggcaaggccatcagcgacggcttcaacctgttgcaggagctgtcggcggtcaaccgc
gaaagccagctcacgcccatcggtcggcaattggcgcgcctgcccatcgacccgcgcctg
gggcgcatggtgctggaaggtgccaagcagggcagcctggaggaaatcctcattgtcgcc
gccgcgctgtcggtgcaggacccgcgcgaacgaccgatggatcgccagcaggctgccgac
caggcccatgcgcagtggaaggatgtggattcggacttcgccgcgctgatcaacctgtgg
cgcggcttcgaggagaagcgccaggagctgggcagcaacccgctgcgtacctggtgcaag
aagaacttcctcaactacatgcgcctgcgcgaatggcgcgatgcgcaccggcaattggtg
ttgatcgcccgtgaactgcagttgagcggcaatgcttcccgtaggagcccgcttgcgggc
gatgatggtcaggcggatcgcccgcaagcgggctcctacaaagaatcggttgtccctacc
aaggatacccgcgtcaacgccatcgcccgtcagcaggccgaggccagtgaggcagcggtg
cgggcgaagaactacgccgccgtgcacaaggcgattctcgccggcctgctcagccagatc
ggccagaagaccgaggagggcgactacctcggcgcgcgccagcggcgtttctggattcac
ccgtcgagcgtgatcgggcgcaagaagcccaactggatcatggccgccgagctggtggaa
accaccaagctgttcgcccgcatggtggcgaagatcgagccggactggatcgagccgctg
gcggcgcatctggtgaagaagaaccatctggaaccgcactgggagaagaagcgcggccag
gtggtggcgtacgagcaggtcaccctgtacggcatgatcatcgtcggccgccgcccggtg
cattacggccccatcgacccgccggtggcgcgcgagatgttcattcgcgagggcctggtg
cgtggcgagatcaacagccgcgtgcgctgcctgaccgccaaccgccagttgctcgaacgc
ctcgacgagctggaggccaagtcgcgccgccgcgacattctcgccgacgaggaaaccctg
ttcggctattacgatgcgcgcatcccgcaggacatctaccaggccgccagtttcgagagc
tggtacaagaagggcagcgccgccgacgcgcagcttctgatcatgcgcgaggaagatgcc
ctggcccgcgatgccaaggaggtcaccgccgcgcagtacccggacaccctgcgcatcggc
gagctgcaattgccgctgagctatcacttcgagcccaaccacccgcgtgacggcgtgacc
ttgcgcgtgccggcgccgctgttgccgcaactgcagcccgagcgcctggaatggttggtg
ccggggctgctggaggccaagtgcattgccctggtacgtggcctgcccaaggcgctgcgc
aagaactttgtaccagtgccggatttcgtcggcgcagcgctggacaagctggtgttcggc
cagggctcgctgccgcaggcgctggggcatgagctgctacgcatgaccggcgcacgggta
tccgacgaggcctgggcggaagcggctgaaggcatcgaaaaccacctgaagatgaacatc
gaggtggtggatgcgcgcggcaagttcctcggtgaaggccgcgacctcgccgagctgacc
gcacgtttcgccgaggccagccaggccgcactagccatcccgcagcagagcgacaagccg
aaagcggtggaggccaaggccttcgcccaggtggcggaaaagactcagcagaagatcgcc
gggctgtcgatgacggtctatccggcgctggtggaggaggccggtgtggtcaaggaaggg
cgcttcccgacccaggccgaggccgagttccagcatcgccgtgctctgcaacgcctgctg
ttacagcaactggccgagcaggccaagttcctgcgcggcaagctgccggggctgaccgag
ctgggcctgctgtatcgcgacattggccgtatcgaggtgttggtcgaggacattctgctg
gccagcctggatgcctgcatcctcgaaggcgaagccacgctgccacgcgacggcgcggcc
ctggcgcaactggccgagcgcaagcgcggcgactggacggcgcatgccgagcgcatcgcc
cgccaggtgctggaaatcctcaagctcaaccatggcctgcagaagcgcttcaagggcaag
atcgacctggcccaggccatggcgctcaacgacatcaagctgcaactggccaatctggtc
tatgccggcttcgtgcgcgaaacgccgggcgagtggctcaaggaaatcccgcgttacctc
aaggccatcgagcagcgcctggacaaggtgggcgctcaggtgcagcgcgaccgcgtgtgg
acgggcgagctcacaggctactgggaacagtacaagacgcgcactgccaaacatgcccag
gaaggcaagcgtgacccgcaactcacgctgtatcgctggatgctggaggagtaccgcgtg
tcgctgttcgcccagcaactgggcacgaagatggcggtatcggacaaacgcctgagcaag
cagtggacgctggttgaaggttga
DBGET
integrated database retrieval system
