Pseudomonas wenzhouensis: J7655_18785
Help
Entry
J7655_18785 CDS
T07852
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pwz
Pseudomonas wenzhouensis
Pathway
pwz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pwz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
J7655_18785 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pwz03021
]
J7655_18785 (rpoD)
Transcription machinery [BR:
pwz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J7655_18785 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
ING
TMPIT
ADIP
Motif
Other DBs
NCBI-ProteinID:
UFQ97301
LinkDB
All DBs
Position
4029345..4031192
Genome browser
AA seq
615 aa
AA seq
DB search
MSVKAQQQSRLKELISRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAHFPGTVDGILAEYTRVTTEGGRLAEVLSGYIDPDDGSVPDEAA
APVPVKDGAAAEESDDEEEDESGDDEEEEGDGGPDPEEAARRFTAVAEQQDKVQKALKKY
GRGSKQVTEELAALAELFMPIKLVPKQYDALVTHVRGALDRLRAQERAIMQLCVRDARMP
RADFLRLFPGNEIDMDWAADLAKGKAKYAEALGNLQGDIQRCQQKLADLEAECSLSLAEI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE
SLKEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPTRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtaaaagcgcaacagcaatctcgtttgaaagaattgatcagccgcggtcgcgag
cagggttacctgacgtacgcggaggtcaatgaccacctgccggaagatatttccgatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggacgccctgttgttggccgaagccgacaccgacgaagccgcagccgaa
gaagctgcagccgccctcgccgccgttgagaccgatattggccgcaccaccgacccggtg
cgcatgtacatgcgtgaaatgggtaccgtggaactgctgacccgcgaaggcgagatcgaa
atcgccaagcgtatcgaggaaggcatccgcgaagtcatgagcgccatcgctcacttcccc
ggcactgtcgacggcatccttgccgagtacacccgcgtcaccaccgagggcggccgcctg
gccgaagtcctcagtggctatatcgacccggatgacggcagcgtacccgacgaagccgcc
gcccccgtgcccgtcaaagatggcgccgccgctgaagaaagcgacgacgaggaagaagac
gagagcggcgacgacgaggaagaagaaggcgatggcggcccggacccggaagaagcggct
cgccgcttcaccgccgtggccgagcagcaggacaaagtccagaaagccctgaagaagtat
ggccgtggcagcaagcaggtcaccgaagagctggccgccctggccgagctgttcatgccg
atcaagctggtgcccaagcaatacgacgccctggtcacccatgtacgcggcgcgctcgac
cgcctgcgtgcacaagaacgcgccatcatgcagctgtgcgtccgcgatgcgcgcatgccg
cgtgccgacttcctgcgcctgttcccgggcaacgaaatcgacatggattgggcagccgac
ctggccaagggtaaagccaagtacgccgaagccctgggcaacctgcagggcgacatccag
cgctgccagcagaagctggccgacctggaagccgaatgcagcctgagcctggccgagatc
aaggacatcaaccgtcgcatgtccatcggcgaagcgaaagctcgccgcgccaagaaggaa
atggtcgaggcgaacctgcgtctggtgatctccatcgccaagaagtacaccaaccgcggc
ctgcagttcctcgacctgatccaggaaggcaacatcggtctgatgaaggcggtggacaag
ttcgaataccgtcgcggctacaagttctcgacctacgccacctggtggattcgccaggcg
atcacccgctcgatcgccgaccaggcgcgcaccatccgtattccggtgcacatgatcgag
accatcaacaagctcaaccgcatctcccgtcagatgctgcaggaaatgggtcgcgagccc
acgccggaagagctgggtgagcgcatggaaatgcccgaggacaagatccgcaaggtattg
aagatcgccaaagagccgatctccatggaaaccccgattggcgacgacgaagattcgcac
ctgggcgacttcatcgaggacagcaccatgcagtccccgatcgacgtagccacggtcgaa
agcctcaaggaagccactcgcgaagtgctggccggcctcaccgcccgtgaagccaaggtg
ctgcgcatgcgcttcgggatcgacatgaacaccgaccacaccctcgaggaagtgggcaag
cagttcgacgtcacccgcgagcgtatccgtcagatcgaagccaaggcgctgcgcaagctg
cgtcacccgacgcgaagcgagcacctgcgctccttcctcgacgagtga
DBGET
integrated database retrieval system
