Pseudomonas xanthosomatis: KSS93_04210
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Entry
KSS93_04210 CDS
T07606
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pxa
Pseudomonas xanthosomatis
Pathway
pxa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSS93_04210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxa03019
]
KSS93_04210
Enzymes [BR:
pxa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KSS93_04210
Messenger RNA biogenesis [BR:
pxa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KSS93_04210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QXH47133
LinkDB
All DBs
Position
complement(956385..958292)
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AA seq
635 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPGGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLNFISACIFGGVGMN
PQVQAMAKGVDVLVACPGRLLDLAGQGSVDLSKVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITMGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERVTKQRIPDGDLMGFDASQVEAEKPEVRERPQNNGRGGRNQQARGEGSKDGSGGR
KDKGKDKGKSKPAAEKPADKEKSGDNKQQQGQQRKPRDKKPRQQQAAQGQSAIPKPAANR
DPEEFLDDDVDNFGNRADYVSPYQNAKNGRNRRPGGNGGNGGQSQGQGQRNGGGQGQGQG
RSNGGQQRQGSGEKRARNGGGSNGGGARRDNNAGRNRRDDTARQEPAVRNPRDSQPAPVI
IRKESKLDRYPTPEQLDDLPSRPRGERPALLTRKG
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctctagtccgcgctatcgaggctgcgggc
tatacccagcccactccggtgcaacagcgggctattcccgccgtgttgcaaggccgcgac
ctgatggttgccgcccagacaggtactggcaagaccggcggtttcgcactgccgattctc
gagcgcctgttccccggcggccaccctgacaaatcgcagcgccacggcccgcgccaaccc
cgcgtgctggtgctcacccccacccgcgagctggccgcccaggtacacgacagcttcaag
gtgtacgcccgcgacctgaacttcatcagcgcctgcattttcggcggcgttggcatgaac
ccgcaggtgcaggccatggccaagggtgtcgacgtgctggtcgcctgcccgggccgcctg
ctcgacctagccggccaaggcagcgtcgacctgtccaaggtcgaaatcctggtgctggac
gaagccgaccgcatgctcgacatgggcttcatccatgacgtgaagaaagtcctggcccgc
ctgccggccaagcgccagaacctgctgttctcggccactttctccaaggacatcaccgac
ctcgccgacaagctgctgcacaaccccgagcgcatcgaggtcacgccgccgaacaccacc
gtcgagcgtatcgagcagcgcgtgttccgcctgccggccagccacaagcgcgcactgctg
gcgcacctgatcaccatgggtgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctcgaaaaacacggcctgaccgctgccgcgatccac
ggcaacaagagccagaacgcccgcaccaaggcgctggccgacttcaaggccaacagtgtg
cgcgtgctggtggccaccgacatcgccgcccgcggcctggacatcgaccagttgccccac
gtggtcaacttcgagctgcccaacgtcgaggaagactacgtacaccgcatcggccgtacc
ggccgtgccggccgctcgggcgaggccatctcgctggtggctccagacgaagaaaaactg
ctcaagagcatcgagcgggtcaccaagcagcgcatccctgatggcgacctgatgggcttt
gacgcatcgcaagtcgaggcagaaaagccagaagtgcgcgagcgcccgcagaacaacggc
cgtggcggtcgcaaccagcaggcccgcggcgaaggcagcaaagacggcagcggcggtcgc
aaggacaagggcaaggacaaaggcaaaagcaagcctgcggccgaaaagcctgccgacaag
gagaagtccggcgacaacaagcagcagcaaggccagcagcgcaagccgcgtgacaagaag
ccgcgccagcagcaggccgcacagggccagagtgccattccaaagcctgcagccaaccgt
gacccggaagagttcctcgacgacgacgtggataacttcggtaaccgcgccgactacgtc
agcccctaccagaacgccaagaacggccgtaatcgccgcccgggcggtaatggtggcaat
ggcggccagagccaggggcaaggccaacgcaacggtggtggccagggtcaaggccagggc
cgtagcaacggcggccagcagcgtcagggttccggcgagaaacgcgcccgcaatggcggt
ggcagcaacggtggcggcgcgcgccgcgacaacaacgctggccgcaaccgccgtgacgac
actgcccgccaggagcctgccgtgcgcaacccgcgcgactcgcaacctgcaccggtgatc
atccgcaaggaatccaagctcgaccgttacccgacgcccgagcaactggacgacctgcca
agccgcccacgcggtgaacgcccggccttgctgacccgcaagggctaa
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