Pseudomonas xanthosomatis: KSS93_04695
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Entry
KSS93_04695 CDS
T07606
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pxa
Pseudomonas xanthosomatis
Pathway
pxa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSS93_04695 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxa03019
]
KSS93_04695 (rnr)
03016 Transfer RNA biogenesis [BR:
pxa03016
]
KSS93_04695 (rnr)
Enzymes [BR:
pxa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KSS93_04695 (rnr)
Messenger RNA biogenesis [BR:
pxa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KSS93_04695 (rnr)
Transfer RNA biogenesis [BR:
pxa03016
]
Prokaryotic type
tRNA degradation factors
KSS93_04695 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
CSD
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
QXH47227
LinkDB
All DBs
Position
1069795..1072377
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AA seq
860 aa
AA seq
DB search
MADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREQLAEEFGLYEEDQIEALR
RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSEDLFLSPAQMR
LVFDGDRGLARVSGVDRRGRREGVLVEVISRAHESVVGRYFEEGGIGYVTPDNPKIQQEV
LVTAGRNGGAKIGQFVSIKITHWPTPRFQPQGDVIEVIGNYMAPGMEIDIALRSYDIPHV
WPKDVIKEARKFRSEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSG
GWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRL
AMVCEMTINKAGQMVDYQFYEGLIHSHARLTYNKVSSMLEHARTREGKALREEYSEVLPD
LKHLYALYKALVAARHTRGAIDFETQETRIIFGEDRKIAEIRPTVRNDAHKLIEECMLAA
NVATAEFLQKHNVPSLYRVHDGPPPERLEKLRAFLGELGLTLHKGKDPSPKDYQALLASI
AGRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSVI
RSKMDTTHVKRAGALSIPKARIYPYDENSLEQMGEQCSMTERRADEATRDVVNWLKCEYM
RDRVGETFPGVITAVTGFGLFIELTDIYVEGLVHVSALPGDYYHFDPVHHRLSGERSGRS
FRLGDTVEVKVMRVDLEQRKIDFEMSEATVNAPVGRKPRAAGASEAAPAPAQAPVQEAKI
SPKPRSRKSETADAYFPKDAVQRNAEVRKSREMKKALMGEARSSHAGSKADKGSKASGKP
TKHRKGPPKSGAPRKGKNKS
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaatccctcgatcccgaggccgctcgcgaagcggaaaaatacgataat
cccatccccagccgtgagctgatcctgcagcgcctcgccgaccgtggcgagccggcagcc
cgtgaacagctggccgaagaattcggtctttacgaagaagaccagatcgaagccctgcgc
cgccgcctgcgcgccatggagcgcgacggtcagcttatctatacccggcgcggcacctat
gccccggtagacaagcttgacctgatctgcggccgcgtctccggccaccgtgacggcttc
ggcttcctgatccccgacgacggcagcgaagacctgttcttgagccccgcgcagatgcgc
ctggtgttcgacggcgaccgcggcctggcccgggtgtccggcgtcgaccgccgtggccgg
cgcgagggcgtgctggtcgaagtcatctcccgcgcccacgaaagcgtggtcggccgctac
ttcgaagaaggcggcatcggctacgtgaccccggacaacccgaagatccagcaggaagtg
ctggtgactgccgggcgtaacggcggcgccaagatcggccagttcgtctcgatcaagatc
acccactggccgaccccgcgcttccagccgcagggtgacgtgatcgaggtgatcggcaac
tacatggcgccgggcatggagatcgacatcgccctgcgcagctatgacattccgcacgtc
tggccgaaggacgtgatcaaggaggcgcgcaagttccgttccgaagtcgaggagaaggac
aaggagaagcgcatcgacctgcgccacctgccgttcgtcaccatcgacggcgaggacgcc
cgcgacttcgacgacgccgtctactgcgagccgctgggcaagctgcgcctgttctccggc
ggctggcgcctgtacgtggccattgctgatgtgtccagctacgtgcgcctgggctcggcc
ctggacgtcgaggcccagcagcgcggcaactcggtgtacttccccgagcgcgtggtgccg
atgctccccgaggagctgtccaacggcctgtgctcgctgaacccgcacgtcgatcgcctg
gccatggtctgcgagatgaccatcaacaaagccggccagatggtcgactaccagttctac
gaaggcctgatccactcccacgcgcgcctgacctacaacaaggtcagcagcatgctggag
cacgcccgtacccgcgaaggcaaggccctgcgcgaggagtacagcgaggtgctgccggac
ctcaaacacctgtacgcgctgtacaaggcgctggtggcggcccgtcacacccgtggcgcg
atcgacttcgaaacccaggaaacccggattattttcggtgaagaccgcaagatcgccgaa
atccgcccgacggtgcgcaacgacgcccacaagctgatcgaggaatgcatgctggcggcc
aacgtcgccacggccgagttcctgcaaaagcacaacgtgccgtcgctgtaccgcgtgcat
gacggcccgccgccggagcgcctggaaaaactgcgcgccttcctcggcgagctgggcctg
accctgcacaagggcaaggacccgtcaccgaaggattatcaggccctgctggcgagcatc
gccgggcgcccggacttccacctgatccagaccgtcatgctgcgctcgctcagccaggcg
gtgtacagcaccgagaacaatggccacttcggcctgaactacgaggcgtacacccacttc
acctcgccgatccgtcgttaccccgacctgctggtgcaccgtgccatccgcagtgtgatc
cgttcgaagatggacaccacgcacgtcaagcgtgccggcgccctgagcattcccaaggcg
cgcatctacccgtacgacgagaacagcctggagcagatgggcgagcagtgctcgatgacc
gagcggcgcgccgacgaggccacccgcgacgtggtcaactggctcaagtgcgaatacatg
cgtgaccgcgtgggcgaaaccttccccggcgtgatcactgcagtgaccggttttggcctg
ttcatcgagctgaccgacatctacgtcgaaggcctggtgcacgtcagtgcgctgccgggc
gactactaccacttcgacccggtgcaccaccgtctgtcgggtgagcgcagcgggcgcagc
ttccgcctgggcgatacggtcgaggtcaaggtcatgcgcgtcgacctcgagcagcgcaag
atcgacttcgagatgtccgaagccaccgtcaacgccccggtcggccgcaagccgcgtgcc
gccggtgccagcgaagcggcgccagcgccagcccaggccccggtgcaggaagcgaaaatt
tcgcccaagccgcgcagccgcaagagcgaaaccgctgatgcgtacttccccaaggacgcc
gtgcagcgcaacgccgaggtgcgcaagagccgcgaaatgaaaaaggcgctgatgggtgag
gcgcgctccagccatgcaggcagcaaggcggacaagggcagcaaagcgtccggcaagccg
accaagcatcgcaaggggccgccgaagtccggtgcgccacgtaaaggcaagaacaagtca
tga
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