Pseudomonas xanthosomatis: KSS93_05355
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Entry
KSS93_05355 CDS
T07606
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pxa
Pseudomonas xanthosomatis
Pathway
pxa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pxa00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KSS93_05355 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pxa03021
]
KSS93_05355 (rpoD)
Transcription machinery [BR:
pxa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KSS93_05355 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QXH47354
LinkDB
All DBs
Position
complement(1235556..1237406)
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDYILGEYDRVTAEGGRLSDVLSGYIDPDDNIAAPTEE
VPVPGAKAPAAKEESDDEEEESEGSDDEEETESGPDPVVAAQRFGAVADQLQATLKVVKK
NGRSAKDSIAALQALADLFMPIKLVPKQFDVLVERVRDALNRLRQQERAIMQLCVRDARM
PRADFLRLFPSNETDQTWSGDLAKRNTKWAAALGEKDAAIVACQQKLIDLETETGLTVAE
IKEVNRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcaatctcgtatcaaagagttgatcacccgcggtcgtgag
cagggctacctgacttacgcggaggtcaacgaccacctgcctgaggatatttcagatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggatgccctgctgttggcggaagccgacaccgacgaagcggcggccgaa
gaagccgctgccgcgttggcagcagtcgaaaccgatatcggccgcacgaccgacccggtg
cgcatgtacatgcgtgaaatgggtactgtcgagctgctgacccgcgaaggcgagatcgaa
atcgccaagcgcatcgaggaaggcatccgtgaagtcatgggcgccatcgcccacttcccg
ggcaccgtcgattacatcctcggcgaatacgaccgcgtcaccgccgaaggcggccgcctg
tccgacgtgctgagcggctacatcgaccccgatgacaacattgccgcgccgaccgaagaa
gtgccggtgccgggtgccaaagccccggcagccaaggaagagtcggacgacgaggaagaa
gaaagcgaaggcagcgacgacgaggaagagaccgaaagcggtcccgacccagtggttgca
gcccagcgtttcggcgccgttgccgatcagctccaggccaccctcaaggtcgtgaagaaa
aacggtcgcagcgccaaggacagcatcgctgccctgcaggccctggcagacctgttcatg
ccgatcaaactggtgcccaagcagttcgacgtactggtcgagcgcgtgcgcgacgccctg
aaccgcctgcgccagcaagagcgtgcaatcatgcagctgtgcgtgcgtgatgcgcgcatg
ccgcgtgccgacttcctgcgtctgttcccgagcaacgagaccgaccagacctggtccggt
gacctggccaagcgcaacaccaagtgggctgccgccctgggtgagaaagacgccgccatc
gtcgcctgtcagcagaaactgatcgaccttgagaccgaaaccggcctgaccgtcgccgaa
atcaaggaagtcaaccgtcgcatgtccatcggcgaggcgaaagcccgtcgcgccaagaag
gaaatggtcgaggccaacctgcgtctggtgatttccattgcgaagaagtacaccaaccgt
ggtctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtggac
aagttcgaataccgtcgcggttacaagttctcgacctacgccacctggtggatccgccag
gcgatcacccgttcgatcgccgaccaggcacgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccgccagatgctgcaggaaatgggccgtgaa
ccgaccccggaagagctgggtgagcgcatggaaatgcctgaggacaagatccgcaaggta
ttgaagatcgctaaagagccgatctccatggaaaccccgatcggcgacgacgaagattcg
cacctgggcgacttcatcgaggactccaccatgcagtccccgatcgacgtagccacggtc
gaaagcctcaaggaagccacccgcgacgtgctctcgggcctgaccgcacgcgaagccaag
gtgctgcgcatgcgtttcggtatcgacatgaacaccgaccacaccctcgaagaagtcggc
aagcagtttgacgtgacccgtgagcggatccgtcagatcgaagccaaggcgctgcgcaag
ctgcgccacccgacgcgaagcgagcacctgcgctccttcctcgacgagtga
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