Pseudomonas xanthosomatis: KSS93_06160
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Entry
KSS93_06160 CDS
T07606
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pxa
Pseudomonas xanthosomatis
Brite
KEGG Orthology (KO) [BR:
pxa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pxa03016
]
KSS93_06160
Enzymes [BR:
pxa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KSS93_06160
Transfer RNA biogenesis [BR:
pxa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KSS93_06160
Prokaryotic type
tRNA splicing ligases
KSS93_06160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4402
Motif
Other DBs
NCBI-ProteinID:
QXH47500
LinkDB
All DBs
Position
1389315..1390520
Genome browser
AA seq
401 aa
AA seq
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MNILEVAGGKPIKLWTDGVPVDDGARRQLSNTAQMPFIFKHLAVMPDVHLGKGSTIGSVI
PTVGAIIPAAVGVDIGCGMIAARTSLHARDLPDHLHGLRSAIEKAVPHGKTFGRRDQGAW
GDVPNHADQAWSALAGRFKAITDKYPQLEKTNNRQHLGTLGGGNHFIEVCLDEADRVWFM
LHSGSRGVGNAIGNLFIQLAQADMRQHIANLPDKDLAYFEEGSRHFADYVEAVEWAQDFA
RQNRELMMLAVVEATRKVLGRPFEARLEAVNCHHNYVQKEQHFGREVLVTRKGAVSAQKG
ELGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTQAKSRFTVEDQQRATAHVECR
KDSAVIDEIPMAYKDIDAVMQAQRELVEVVHTLRQVVCVKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgaacattctcgaagtcgccggcggcaagccgatcaaactgtggaccgacggcgtcccc
gtcgatgacggcgcccgtcgccagctcagcaacaccgcccaaatgccattcatcttcaag
cacctggcggtcatgcccgatgtgcacctgggcaagggctcgaccatcggcagcgtgatc
cccaccgtgggcgcgatcatcccggcggctgtaggcgtggacatcggctgcggcatgatc
gccgcgcgcacctcgctgcatgcccgcgacctgccggatcacctgcatggcctgcgcagt
gcgatcgaaaaggccgtgccccatggcaagaccttcggccgccgcgaccagggtgcctgg
ggcgatgtgccaaaccacgccgaccaggcctggagcgccctggccgggcgcttcaaggca
atcaccgacaagtacccgcaactggagaagaccaacaaccgccagcacctgggcaccctg
ggcgggggcaaccacttcatcgaggtgtgcctggacgaggccgaccgggtctggttcatg
ctgcacagcggctcgcgcggggtgggcaatgccatcggcaacctgttcattcaactggcc
caggccgacatgcgccagcacatcgccaacctgcccgacaaggacctggcgtatttcgag
gaaggcagccggcattttgccgactacgtcgaggcggtggagtgggcccaggatttcgcc
cggcaaaaccgcgaactgatgatgctggcggtggtggaggcgacccgcaaggtgctgggc
cggccattcgaagcgcggctggaggcggtcaactgccaccacaactatgtgcagaaagag
cagcattttggccgcgaagtcctggtgacgcgcaagggggcggtgtcggcgcagaagggc
gaactgggcatcatccccggctccatgggggccaagagtttcatcgtgcgcggcctgggc
aacgaggaatcgttctgctcgtgcagccacggcgctggccgggtgatgagccggacccag
gccaagagccgattcaccgtcgaggaccagcagcgcgccaccgcccatgtggaatgccgc
aaggacagcgcggtgatcgacgagatccccatggcctacaaggatatcgacgcggtgatg
caggcccagcgcgagctggtggaagtggtgcacaccctgcgtcaggtggtgtgcgtgaaa
ggatga
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