Pseudomonas xanthosomatis: KSS93_09705
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Entry
KSS93_09705 CDS
T07606
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pxa
Pseudomonas xanthosomatis
Brite
KEGG Orthology (KO) [BR:
pxa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pxa03009
]
KSS93_09705 (rlmD)
Enzymes [BR:
pxa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KSS93_09705 (rlmD)
Ribosome biogenesis [BR:
pxa03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KSS93_09705 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
MTS
Cons_hypoth95
Methyltransf_11
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_23
Methyltr_RsmB-F
Methyltransf_15
PCMT
TPMT
Methyltransf_4
DREV
PrmA
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
QXH48161
LinkDB
All DBs
Position
2173124..2174482
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AA seq
452 aa
AA seq
DB search
MSRKKSNSGLRFQPAGGNRTAQVPVGKKQRLQIERLSGDGRGIAFIEGRTWFVSGALGGE
EVEARVLGARGKVVEARLERVFQASPERREAPCKHYDRCGGCNLQHLPHEGQLALKQRLL
AEQLQRVAGLQPEEWAAPLSGPEFGYRRRARVAVRWDVKARQLEVGFRAEASQDIIAIDD
CAVLVQPLQSILRHLPTVLRSLGKPQALGHVELFSGTAEAVLVRHVAPLPEDDLARLKAF
CEQANAQLWLQGEGQPAPVDAAAKLGFVLEPWGLELAWRPGDFVQVNAQVNSLMIQQALS
WLAPQADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVERAADNARNNQVHNARFFQ
ADLSQPLAGAGWAAEGFSAVLLDPPRDGAFEVVQGIHGFGAKRLVYVSCNPATLARDAQV
LAGQGYRLKRAGILDMFPQTAHVEAMALFEAG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaagaaaagcaacagcggcctgcgctttcagccagccggcggcaaccgtacc
gcacaagtgcccgtgggcaagaagcaacgcctgcagatcgagcgcctgagcggtgatggc
cgcggcatcgccttcattgaaggccgcacctggttcgtcagcggcgccctgggcggtgaa
gaggtcgaggcacgggtgctcggcgcccgcggcaaggtggtcgaggcgcgcctggagcgc
gtgttccaggccagccccgaacgccgcgaggccccctgcaagcactacgaccgctgtggc
ggctgcaacctgcagcacctgccccacgaaggccagctggcactcaagcagcgcctgctg
gccgagcaactgcaacgggtggccggcctgcagccggaagaatgggccgccccgctgagc
gggccggagttcggctaccgccgccgcgcgcgggtggctgtgcgttgggatgtgaaggcc
cgccagctggaagtcggttttcgtgccgaagccagccaggacatcatcgccatcgacgat
tgcgcagtgctggtacaacccttgcagtcgattctgcgccacttgccgaccgtgctgcgc
agcctgggcaaaccccaggcactgggccatgtagagctgttcagtggtaccgccgaagcg
gttctggtgcgccatgtggcgccattgcccgaggatgacctggcgcgcctgaaggcattc
tgcgagcaggccaacgcgcagctgtggctgcagggcgagggccaaccggcgccggtggat
gccgccgccaagctgggctttgtgctcgagccctgggggctggagctggcctggcggccg
ggcgatttcgtccaggtcaatgcccaggtcaacagcctgatgatccagcaggcgttgagc
tggctggcgccacaggccgatgagcgggtgctggacctgttctgcggcctgggcaacttt
gccctgccgctggcccgccaggcccgcgaggtagtggcggtggaaggcgtgcaggccatg
gttgagcgcgcagcggacaatgcccggaacaaccaagtgcataacgcacggttttttcag
gccgatttatcgcagcctttggcgggcgccggatgggccgccgaaggcttttctgcggta
ctcttggacccaccacgcgacggggcctttgaagtggtgcaaggcatccacgggttcggc
gcaaaacggctggtctacgtatcgtgcaacccggccacgctggcgcgagacgcgcaggtg
ctggcagggcaggggtaccggttaaaaagggccgggattctcgacatgtttcctcagacg
gcgcatgtcgaggccatggcgttattcgaagcaggctga
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