Pseudomonas xanthosomatis: KSS93_11100
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Entry
KSS93_11100 CDS
T07606
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pxa
Pseudomonas xanthosomatis
Pathway
pxa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSS93_11100 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxa03019
]
KSS93_11100 (rne)
03009 Ribosome biogenesis [BR:
pxa03009
]
KSS93_11100 (rne)
Enzymes [BR:
pxa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KSS93_11100 (rne)
Messenger RNA biogenesis [BR:
pxa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KSS93_11100 (rne)
Ribosome biogenesis [BR:
pxa03009
]
Prokaryotic type
rRNA processing factors
KSS93_11100 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QXH48423
LinkDB
All DBs
Position
complement(2495949..2499155)
Genome browser
AA seq
1068 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSDRHGFLPLKEISREYFKKTPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASQDRVAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPEVLNNQSSYEIAASETEEAPQPTATRTLVRQEAAVKTAPARANAPVPSTV
EEPQPAAAPAAPEPSLFKGLVKSLVSLFAGKEEPAAAPAPAAKPASERPARNEERRNGRQ
QSRNRNGRRDEERKPREERAERAPREERQPREERAPREERAPREERAPREERAPREERAP
RQPREDRRGNREERVRELREPLDATPAEREERQPREERAPREERAPREERAPREERAPRE
ERAPREERAPREERAPREERQPRPPREERQPRPDEQVAEQAAELAEEQLPNEEQLQDEQE
GTDGERPRRRSRGQRRRSNRRERQRNANGELIDGDEEAGDEQQPQQHQATELGAELAAGI
AVTAAVATSNISSEAEAQANQQAERASAVAAEAPAEAAVEAPAEAAQPVEQAQAVAIAPV
VEQPVEAPVAVEPSIEPVVEVAPQPVVEEAAVEQPAAAVEVAAEPVVEAPAVEAGEIEQA
PAVVAEPAVEAPAIEQPAPAAEAQPVEAPVEVVEAPVTEQAPVAAEQAPAEAEPATIMLS
NGRAPNDPREVRRRKREAEAAAAAAAQAAAEATPTLETTEDEHKPHHG
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgtagcactggtcgac
ggccagcgcctctacgacctggacatcgagtccggcgcgcgcgagcagaaaaaggccaac
atctacaagggcaagatcacccgtatcgagcccagcctcgaagccgccttcgtcgacttc
ggctccgaccgtcacggcttcctgccgctgaaggaaatctcccgcgaatacttcaagaag
acgccagaaggccgggtcaacatcaaggaagtgctgagcgaaggccaggaagtcatcgtc
caggtcgagaaggaagagcgcggcaacaaaggcgccgccctgaccaccttcatcagcctg
gccggccgctacctggtgctgatgcccaacaacccgcgtgccggcggcatctcccgccgc
atcgaaggcgaagagcgcaacgagctgcgtgaagcactgaacggcctgaccgttccgggc
gacatgggcctgatcgtgcgtaccgcaggccttggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcagctgtggaccgccatcaaagaagcctcgcaagatcgcgtc
gcgccgttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgatgcgcaagaagaagctctgacc
ttcatccgtcaggtgatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgtg
ccgctgttcaaccgcttccagatcgaaagccagatcgaaaccgccttccagcgcgtggtc
gacctgccgtccggtggctcgatcgtgatcgaccccaccgaagccctggtctccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaggaaactgccctgcagaccaac
ctggaggcggctgaagagatcgcccgccagctgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaaaaaccagcgcgccgtcgaagagcgcgtg
cgtgaatgcctggaggccgaccgcgcccgcgtgcaggttggccgcatttcgcgcttcggc
ctgcttgaaatgtcccgccagcgcctgcgcccgtcgctgggcgaaagcagcggcatcgtc
tgcccacgctgctccggcaccggcatcatccgtgacgtcgagtcgctgtcgctggccatc
ctgcgcctgatcgaggaagaagcccttaaggaccgtaccgccgaggttcgcgcccaggtg
ccgatcccggtggctgccttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgtacccgtgcgcgcatcatcatcctgccgaacgatcacctggaaaccccgcacttc
gaagtccagcgcctgcgcgacgacaacccggaagtgctgaacaaccagtccagctacgag
atcgccgcttccgaaaccgaagaagcgccgcagccgaccgccacccgcaccctggttcgc
caggaagccgcggtgaagaccgccccggcccgcgccaacgcgccggtgccgagcaccgtt
gaagagccgcagcctgccgctgccccagccgcaccggaaccaagcctgttcaagggcctg
gtgaagtcgctggtcagcctgttcgccggcaaggaagagcctgccgccgcccctgccccg
gccgcgaagccggccagcgagcgcccggcgcgcaacgaagaacgccgcaacggccgccag
caaagccgcaaccgcaacggccgccgcgacgaagaacgcaagccgcgcgaagagcgtgcc
gagcgtgcaccgcgtgaagagcgtcagccacgtgaagagcgtgcccctcgcgaagaacgc
gcaccgcgcgaggaacgtgccccgcgtgaagaacgcgccccacgcgaagagcgcgcaccg
cgccagccacgcgaagaccgccgtggcaaccgcgaagagcgcgtgcgtgaactgcgcgaa
ccgctggatgccaccccggccgagcgcgaagagcgtcagccacgtgaagaacgtgcacca
cgcgaagagcgcgcacctcgtgaagagcgtgcaccacgcgaagaacgtgcccctcgtgaa
gaacgcgcaccacgcgaagaacgtgcaccacgcgaagaacgtgccccacgtgaagagcgt
caaccacgcccgccacgtgaagagcgccagccacgcccggacgagcaggttgccgaacag
gccgctgagctggccgaggagcaactgccgaacgaagagcaactgcaggacgagcaagaa
ggcaccgatggcgagcgtccgcgccgccgctcgcgtggccagcgccgtcgcagcaaccgt
cgtgagcgccaacgcaacgccaatggcgagctgatcgacggcgacgaagaagccggcgac
gagcagcagccacagcagcaccaggccaccgagctgggtgccgagctggccgccggtatc
gccgtcactgccgccgttgccaccagcaacatcagcagcgaagccgaagcccaggccaac
cagcaggccgaacgtgccagcgccgtggctgccgaagcaccggcagaggccgccgtagaa
gcccctgccgaagccgcccagccggtcgaacaagcccaagccgtcgccatcgcgccagtg
gtcgagcagccagtcgaagccccggtcgccgtcgagccgagcatcgagccagtggttgaa
gtcgcaccacaacccgtggtcgaagaagccgccgtcgagcagcctgctgccgcagttgaa
gtggctgcagagcctgtggttgaagcccctgccgtcgaggccggtgaaatcgagcaggcg
ccagctgttgtcgcggaacctgccgtcgaggccccggccatcgagcagcctgcccctgcc
gctgaagcccagccggtcgaagcccccgtcgaagtggtcgaagccccggtaaccgagcag
gcgccagtggccgccgagcaggccccagccgaagcggaaccggccaccatcatgctgtcc
aacggccgcgcgccgaacgacccgcgtgaagtgcgccgccgcaagcgtgaagccgaagcc
gcagccgccgctgctgcccaggccgccgccgaggctaccccaaccctggaaaccaccgaa
gacgagcacaagcctcatcacggttga
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