Pseudomonas xanthosomatis: KSS93_13935
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Entry
KSS93_13935 CDS
T07606
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pxa
Pseudomonas xanthosomatis
Brite
KEGG Orthology (KO) [BR:
pxa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pxa03032
]
KSS93_13935
03400 DNA repair and recombination proteins [BR:
pxa03400
]
KSS93_13935
Enzymes [BR:
pxa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KSS93_13935
DNA replication proteins [BR:
pxa03032
]
Prokaryotic type
DNA Topoisomerases
KSS93_13935
DNA repair and recombination proteins [BR:
pxa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KSS93_13935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Metal_resist
Motif
Other DBs
NCBI-ProteinID:
QXH44009
LinkDB
All DBs
Position
complement(3118023..3119033)
Genome browser
AA seq
336 aa
AA seq
DB search
MSDCPLPASLHYVDDTLPGFSRRRWRDRFHYFDAEGARIRDADTLARIAALAIPPAYTEV
WICADPQGHLQATGRDARGRKQYRYHAQWRELRDDHKYGRMLAFAQALPGLRRQLEAHLA
RPGLDREKVMALVISLLDSTLIRIGNRRYLRDNRSYGLTTLNNRHVKVQGSTIRFQFRGK
RGVEHDVTLRDRRLAALLKRCMELPGQALFQYLDADGQRHSIGSTEVNQFLQQLTGADFT
AKDYRTWAGSSLALSLLRPLAWEPDSEARRQAAGIVRQVAARLGNTPAVCRRCYIHPAVL
EHYHLGRLGLLPRARQRKGLEADEVALLRFLQELAP
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgagcgactgcccgctgcctgccagccttcattatgtagacgacaccctgcccggattc
agtcgccgccgctggcgtgaccgttttcactatttcgatgccgaaggcgcgcgcatccgc
gacgccgataccctggcgcgcattgccgcgctggcgatcccgccggcctacaccgaggtg
tggatctgcgctgacccgcagggccacctgcaggccaccggccgcgatgcccgcgggcgc
aagcagtaccgttaccacgcgcagtggcgcgagctgcgcgatgaccacaagtacgggcgc
atgctggccttcgcccaagctctgccgggcctgcgcaggcaactggaagcgcacctggca
cgcccggggctggaccgggagaaagtcatggcgctggtgatcagcctgctcgacagcacc
ctgatccgcatcggcaaccgccgctacctgcgcgacaaccgctcctacggcctgaccacc
ctgaacaaccgtcacgtcaaggtgcagggcagtaccatccgcttccagttccgcggcaag
cgcggtgtcgagcacgacgtcaccctgcgcgaccggcgcctggcggccttgctcaagcgc
tgcatggagctgcccggccaggcgctgttccagtacctggatgccgacggccagcgccac
agcatcggctccaccgaggtcaaccagttcctccagcaactgaccggtgccgacttcact
gccaaggactaccgcacctgggccggcagcagcctggcgctgagcctgctgcggccgctg
gcctgggagccggacagcgaggcccggcgccaggctgcgggcatcgtgcgccaggtggca
gcgcggctgggcaatacgccagccgtgtgccggcgctgctacatccaccccgccgtgctg
gagcactaccacctcggacgcctgggcttgctgccgcgtgcccgtcaacgcaaggggctg
gaggcggacgaggtggcgctgcttcgattcttacaagaactggcgccgtaa
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