Pseudomonas xanthosomatis: KSS93_23890
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Entry
KSS93_23890 CDS
T07606
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pxa
Pseudomonas xanthosomatis
Pathway
pxa03410
Base excision repair
pxa03430
Mismatch repair
pxa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pxa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KSS93_23890 (recJ)
03430 Mismatch repair
KSS93_23890 (recJ)
03440 Homologous recombination
KSS93_23890 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pxa03400
]
KSS93_23890 (recJ)
DNA repair and recombination proteins [BR:
pxa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KSS93_23890 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KSS93_23890 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KSS93_23890 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QXH45874
LinkDB
All DBs
Position
complement(5402331..5404040)
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AA seq
569 aa
AA seq
DB search
MRIEPRPLPSTLPLLGNLPPLLTRLYAARGVQSEAELDKSLARLLPYQQLKGIDAAVDLL
VQALDLRQRILIVGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEV
ALQRQPQLLVTVDNGISSVEGVAAAKAAGLKVLVTDHHLPGQQLPDADAIVNPNQPGCAF
PSKSLAGVGVIFYVLMALRARLRSLGRYEQQAQPNIGELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLCDDAALAQDMAQQLDGLNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDAEWHQG
VIGILASRLKERYHRPTIAFADAGDGMLKGSARSVAGFHIRDALDAVAARHPALISKFGG
HAMAAGLSLPEANFPAFAEAFDLEVRRQLREEDLTGRLLSDGVLAVEEFHLDLARALRNA
GPWGQHFPEPLFHGVFQLMEQRVVGERHLKVVLKSECGSVRLDGIAFGVDREVWPNPTVR
WVELAYKLDVNEFRGNESVQLMIAHMEAR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgaaccccgccccctgccgtcgaccttgcccctgctgggcaacctgcccccc
ttgctgacccgcctgtacgccgcccgtggcgtgcagagcgaggccgagctggacaagagc
ctggcacggctgctgccctaccagcagctcaagggcatcgacgcagcggtggacctgttg
gtgcaggccctggacctgcgccagcgtatcctcatcgtcggtgacttcgacgccgacggc
gccactgccagcaccgtcggcgtacttggcctgcgcctgctgggtgcggcccatgtcgat
tacctggtacccaaccgcttcgagtacggctacggcctgaccccggaaatcgtcgaggtg
gcgttgcagcgccagccgcagctgctggtcaccgtggacaacggtatctccagcgtcgag
ggtgtggcggcggccaaggcggccgggcttaaggtgctggtgaccgaccaccacctgccg
ggccagcagttgccggatgccgacgccatcgtcaacccgaaccagccgggctgcgcgttc
cccagcaagtctctggccggggtgggggtgatcttctacgtgctgatggccctgcgcgcc
cgtttgcgtagcctgggccgttacgagcaacaggcgcagccgaatatcggtgagctgctc
gacctggtggcgctgggcagcgtggccgacgtggtgccgctggatgccaacaaccgcatc
ctggtccaccagggcctggagcgcattcgtgcgggccgtgcccggccagggctcaaggcc
attttggaggtcgcccggcgcgatcaccggcgcatcacctccaccgaccttggcttcatc
ctcggcccgcggttgaacgccgccggccgcctggatgacatgagcctgggtatcgaatgc
ctgctgtgcgacgacgctgcgcttgcgcaggatatggcccagcagctggacggcctgaac
caggatcgcaagtcgatcgagcagggcatgcagcgcgaggcgctggcccagctcaaggac
ttgccggtcgagtccatgccctatggcctgtgcctgttcgacgccgagtggcaccagggg
gtgatcggtatcctggcttcgcgcctgaaggagcgctaccaccgcccgaccatcgccttt
gccgatgccggcgacggcatgctcaagggttcggcgcggtcggtggcggggttccatatt
cgcgacgcgctggatgcggtggcggcgcgccacccggcgttgatcagcaagttcggcggg
catgccatggcggctggcctgtcgttgcctgaggcgaatttcccggcgtttgccgaggcg
ttcgaccttgaggtgcgccggcaactgcgtgaggaggacctgaccggccggctgttgtct
gacggggtgctggcggtggaggagtttcacctggacctggcgcgggctttgcgcaatgcc
gggccttgggggcagcactttcccgagccgttgttccatggggtgtttcagttgatggag
cagcgggtggtgggggagcggcacttgaaagtcgtgctcaagagcgagtgcgggtcggtg
cggctggatgggattgcctttggcgtggaccgggaggtttggccgaaccctactgtgcgg
tgggtggagttggcttacaagttggatgtgaatgagtttcgggggaatgagagtgtgcag
ttgatgattgcgcatatggaggcacggtga
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