Pseudomonas xanthosomatis: KSS93_24480
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Entry
KSS93_24480 CDS
T07606
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pxa
Pseudomonas xanthosomatis
Pathway
pxa02020
Two-component system
pxa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pxa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
KSS93_24480
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KSS93_24480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pxa03021
]
KSS93_24480
Transcription machinery [BR:
pxa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KSS93_24480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_21
Motif
Other DBs
NCBI-ProteinID:
QXH45988
LinkDB
All DBs
Position
5541258..5542754
Genome browser
AA seq
498 aa
AA seq
DB search
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDFDNSD
PMADNAENKPVAEVQDTSFQEAASNNSEQLEDGEWAERIPNELPVDTAWEDIYQTSASSL
PSNDDDEWDFTTRTSVGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDTLEE
ICAGFDPELDIELDEVEAVLHRIQQFEPAGIGARSLGECLLLQLRQLPASTPWMAEAQRL
VTDYIDLLGSRDYSQLMRRMKLKEDELRQVIELVQTLNPRPGSQIESSEPEYVVPDVIVR
KDSDRWLVELNQEAIPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNET
LMKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIYEL
KYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVA
KYRESLGIAPSSERKRLM
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctcgtcctaaaaatgggccagcaactgacgatgaccccgcagttgcaa
caggccatccgtctgctccagctctccaccctggacctccagcaggaaatccaggaagcg
ctggagtcgaacccgatgctcgaacgtcaggaagacggcgaagatttcgacaacagcgac
ccgatggcggacaacgccgagaacaagccggtcgccgaagttcaggacaccagcttccag
gaagccgccagcaacaacagcgagcaactcgaagacggcgagtgggccgaacgcatcccc
aacgaactgccggtcgacactgcctgggaagacatctaccagaccagcgccagcagcctg
cccagcaacgatgacgacgagtgggacttcaccacccgcacctcggtcggcgaaagcctg
caaagccacttgctgtggcagttgaacctggcgccgatgtccgacaccgaccgcctgatc
gctgtcaccctgatcgacagcatcaacggccagggctacctcgaagacaccctcgaagaa
atctgcgcaggcttcgaccccgagctcgacatcgagctggatgaagtcgaagcggtgctg
caccgcatccagcagttcgaaccggccggtatcggcgcccgctcgctgggcgaatgcctg
ctgctgcaactgcgccagctgccggccagcacaccgtggatggccgaggcccagcgcctg
gtcaccgactacatcgacctgctcggcagccgtgactacagccagctgatgcggcgcatg
aagctcaaggaagacgagctgcgccaggtcatcgaactggtgcagacgctcaacccgcgc
ccaggctcgcagatcgagtccagcgagcccgaatacgtggtgccggatgtgatcgtgcgc
aaggacagcgaccgctggctggtggagctcaaccaggaagccatcccgcggctacgggtc
aacccgcaatacgcaggcttcgtgcgccgcgccgacaccagcgccgacaacaccttcatg
cgcaaccagttgcaggaggcgcgctggttcatcaagagcctgcaaagccgcaacgagacg
ctgatgaaggtggccacgcagatcgtcgagcaccagcgcggcttcctcgaccacggcgac
gaggcgatgaagccgttggtgctgcacgacatcgccgaggcggtgggcatgcacgagtcg
accatctcgcgggttaccacgcagaaatacatgcacacaccgcgcggcatctacgaactg
aaatactttttctccagccacgtcagcacagccgaaggcggcgaatgctcgtccacggcg
atccgcgcgatcatcaaaaaactggtcgccgcggaaaaccaaaaaaagccattgagtgac
agcaagatcgctggtttactggaggcacaaggcatccaggtagcccgtcgcaccgtcgcc
aagtaccgcgagtcgctggggattgccccgtcaagcgagcgcaagcgactgatgtag
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