Pseudomonas xanthosomatis: KSS93_26135
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Entry
KSS93_26135 CDS
T07606
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pxa
Pseudomonas xanthosomatis
Pathway
pxa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pxa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KSS93_26135 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pxa03400
]
KSS93_26135 (recD)
Enzymes [BR:
pxa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KSS93_26135 (recD)
DNA repair and recombination proteins [BR:
pxa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KSS93_26135 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
AAA_11
UvrD_C_2
NAT10_TcmA_helicase
SH3_13
Viral_helicase1
AAA_22
UvrD-helicase
AAA_16
SLFN-g3_helicase
AAA_17
AAA_28
TraI_hel_assoc_N
T2SSE
NACHT
nSTAND3
NTPase_1
AAA_5
Motif
Other DBs
NCBI-ProteinID:
QXH46301
LinkDB
All DBs
Position
complement(5915264..5917339)
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AA seq
691 aa
AA seq
DB search
MSRSLDDLLPTALQAEHLSALAPLHSSLDLLALLDRWVERGWLRALDRAFVSFLEERAPG
SDPLVLLAAALASHQLGHGHVCLDLAQTLAEPDFALSLPPEGDALAGPLLLPSQLLASLD
LPTWLQRISESPLVADADAPGQSPRPLVRSGERLYLRRYWSYERRIDSALHQRLARQQAQ
QPDLAERLGQLFAGGAPAGEVDWQKLACALATRAGFSVITGGPGTGKTTTVVRLLALLQA
PAVEQGRPLRIRLAAPTGKAAARLTESIGQQVERLQVDGAVRAQIPTEVSTVHRLLGSRP
GSRHFRHNAGNPLPLDVLVVDEASMIDLEMMANLLDALPPAARLVLLGDKDQLASVEAGA
VLGDLCRDAETGCYWPQTVNWLEQVGGQSLAASGLLPGIAERNPLAQQIVMLRHSRRFGE
GSGIGQLARLVNRQQADQARELLNSAPQDVFCLTLGGEHDRRFDRLLLDGLDRGPEGPQG
YRGYLRTIGRLRPPPGTPGDDPRWEQWAAQVLRSFEDFQLLCAVRKGVWGVEGLNERVAR
VLHNAGLIDNQQAWYEGRPVLVTRNDYGLGLMNGDIGIALRLPDDQGQALLRVAFPRNDG
SGGVRFVLPSRLSEVETVFAMTVHKSQGSEFAHTALVLPDALNPVLTKELVYTGITRAKH
CFSLIEPRQGVFEEAVLRKVRRISGLMLEQL
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagcctcgacgacctgctgcccaccgccctgcaagccgagcacctcagtgcc
ctggcgccgctgcacagcagcctcgacctgctggccctgctcgaccgctgggtggagcgc
ggctggctgcgcgccctcgaccgggcgttcgtcagcttccttgaagaacgcgcccccggc
agcgacccgctggtactgctggccgccgcactggccagccaccagctgggccacggccac
gtgtgcctggacctggcgcagaccctcgccgagccagacttcgccttgtcgctgccgccg
gagggcgatgccctggccggcccgctgctgctgccttcgcagctgctggccagcctcgac
ctgccgacctggctgcaacgcatcagcgaaagcccgctggtggccgacgccgatgccccc
gggcaatcgccccggcccctggtacgcagcggcgagcgcctgtacctgcgccgctactgg
tcctatgagcggcgcatcgactcggcgctgcaccagcgcctggcgcgccagcaggcgcag
cagcccgacctggccgagcgcctcgggcagctgttcgccggcggcgcaccggcaggcgag
gtggactggcagaagctcgcctgtgccctggccacccgtgccggtttcagcgttattacc
ggcggccccggcaccggcaagaccaccaccgtggtacgcctgctggccctgctgcaggcc
cctgcggtagagcagggcaggccgctgcgcatccgcctggcggcgcccaccggcaaggcc
gccgcacgtcttaccgagtccatcggccagcaggtcgagcgcttgcaggtggacggtgcc
gtacgcgcgcagatccccaccgaggtcagcaccgtgcaccgcctgctcggcagccgccca
ggctcgcggcactttcgccacaacgccggcaacccgctgccgctggatgtactggtggtc
gatgaagcctcgatgatcgacctggagatgatggccaacctgctcgacgccctgccgccg
gctgcgcgcctggtactgcttggcgacaaggaccagttggcctcggtggaagccggcgcg
gtgctgggcgatttgtgccgcgacgccgaaaccggctgttactggccgcagaccgtcaat
tggctggaacaggtgggcggccagtcgctggccgccagcggcctgctgccaggcatcgcc
gagcgcaacccgctggcccagcagatcgtcatgctgcgccattcgcggcgcttcggcgaa
ggcagcggcattggccagctggcccggctggtcaaccgccagcaggcagaccaggcccgc
gagctgctcaacagcgcgccgcaggacgtgttttgcctgaccctgggcggcgagcacgac
aggcgcttcgaccgcctgctgctcgatggcctcgaccgcggccccgaaggcccgcagggc
taccgcggctacctgcgcactatcggccgcctgcgcccgccgcccggcacccctggcgac
gacccgcgctgggagcagtgggcggcgcaagtgctgcgcagcttcgaagatttccagctg
ctgtgcgccgtgcgcaaaggggtgtggggcgtcgagggcctgaacgagcgcgtggcccgc
gtgctgcacaacgccgggctgatcgacaaccagcaagcctggtacgaaggccgcccggtg
ctggtgacccgcaacgactacggcctgggcctgatgaacggcgacatcggcatcgccctg
cgcctgcctgacgatcagggccaggcgctgctgcgcgtggccttcccgcgtaacgacggc
agcggcggggtgcgcttcgtgctgcccagccgcctgagcgaagtagagaccgtgttcgcc
atgaccgtgcacaagtcccagggctcggagttcgcccacaccgccttggtgctgcccgac
gcgctgaacccggtgctgaccaaggagctggtgtacaccggcatcacccgcgccaagcat
tgcttcagcctgatcgagccgcgccagggcgtgttcgaggaggcggtcctgcgcaaggtc
cggcgcatctccggcctgatgctcgagcagctctga
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