Pyrus x bretschneideri (Chinese white pear): 103927029
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Entry
103927029 CDS
T03446
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03040
Spliceosome
pxb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103927029
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103927029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pxb03041
]
103927029
04121 Ubiquitin system [BR:
pxb04121
]
103927029
03400 DNA repair and recombination proteins [BR:
pxb03400
]
103927029
Enzymes [BR:
pxb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103927029
Spliceosome [BR:
pxb03041
]
Complex B
Other components
Prp19 complex
103927029
Complex C
Prp19-CDC5 complex
103927029
Ubiquitin system [BR:
pxb04121
]
Ubiquitin ligases (E3)
U-box type E3
103927029
DNA repair and recombination proteins [BR:
pxb03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
103927029
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_DCAF12
Beta-prop_SPT8
Beta-prop_SCAP
eIF2A
Beta-prop_WDR41
WD40_like
Beta-prop_DCAF4
zf-Nse
U-box
PEP5_VPS11_N
Beta-prop_ACSF4
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
103927029
NCBI-ProteinID:
XP_009334204
LinkDB
All DBs
Position
Unknown
AA seq
520 aa
AA seq
DB search
MNCALSGEVPEEPVVSKKSGLLFEKRLIERHISEYGKCPVTGEPLTAEDIIPVQTGKIVR
PRPAQAASIPGMLGMFQLEWDSLMLANFAMEKQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERQIPAQSAVTANAAVHSNGTPVADDQQGPGASNIRPGISASILEKMT
ECNVTLSQQRKMRQISPTLAPVDALERYTQISSHPLHRTSKPGILSIDIQSNKNLIATGG
VDTNAVIFDQTSGQIISTLSGHSKKVTSVKFVGQDDLFISGSADKTVRIWQGTDDGNYNC
RHILKDHTAEVQAVTVHATGDYFVTASLDSTWCFYDIASGLCLTQVEDASASEGYTSVAF
HPDGLILGTGTSEALVKIWDVKGQSNVATFEGHVGAITAISFSENGYFLATAASDGIKLW
DLRKLRNFKKFTPYGAEPTNCVEFDYSGNYLAAAGSDIRIIQTGSVKSEWNTVKTFPDMS
GTGKTTSVKFGPDANYIAVGSMDRNLRIFGLPGDDSAMES
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgaactgcgcactatccggcgaggtgccggaggagcctgtggtctccaagaagtctggg
ttgctcttcgagaagcgtttaatcgagcgacatatctcggaatatggaaaatgcccggta
accggtgaaccacttaccgctgaagatatcattccagttcaaacggggaagatagtgagg
cccagacctgcacaagctgctagtattcctggaatgctcggaatgttccagctcgaatgg
gatagtttgatgctagccaactttgcaatggagaaacaactacatacagcaaggcaagag
ttgagtcatgctttgtatcagcacgatgctgcttgccgtgttattgcaagactcaaaaaa
gaaagggacgaagcaaggtcattacttgctcaggctgagagacaaattcccgcacaatca
gcagttacggcaaatgctgctgtccatagcaatggaacaccagttgctgatgaccagcaa
ggacctggtgcgagcaatatacgacctggaatatctgccagtatcctagagaagatgacc
gaatgtaatgtaactctttcacagcagcggaagatgcggcagatatccccaactttggct
ccggttgatgcgttggagaggtatactcagatatctagtcatcctcttcatagaacaagc
aaaccaggaattttatcgattgacattcagtctaacaagaacctcattgcaactggaggg
gttgatacaaatgctgtaatctttgatcaaacatcagggcaaatcatatctactcttagt
ggtcattcgaagaaggttacaagcgtgaaatttgtaggtcaggatgatctgttcataagt
ggatcagcagacaagacagttcgcatatggcaaggcactgatgatgggaactataactgt
aggcacattttgaaggaccatactgccgaggtgcaagctgtcactgtacatgccacgggt
gactactttgtgactgcttctcttgatagtacatggtgcttttatgatattgcctctggg
ttatgtctaacacaggttgaggacgcttctgcttcggaaggctatacatctgtggcattt
catcctgatggtctcattcttggaacaggcacctcagaggcacttgtgaaaatttgggat
gtaaagggtcagtcaaatgttgcaacatttgagggacatgttggcgcaataactgcaatc
tccttctctgagaatggttactttcttgcgaccgcagctagtgatggcattaagttgtgg
gatctacgcaaattgaggaacttcaagaaatttactccatacggtgctgaaccaacaaac
tgtgttgaatttgactacagtggaaattaccttgctgctgcaggatctgatataagaatc
atccaaactggtagcgtcaaaagtgaatggaacactgtaaagactttccctgatatgtct
ggcacaggtaaaacaacaagtgtgaagtttggaccagatgcaaattatattgcggtagga
tcgatggaccgtaaccttcgcatttttggcctgcctggcgacgatagtgcaatggagtcc
tga
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integrated database retrieval system
