Pyrus x bretschneideri (Chinese white pear): 103927729
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Entry
103927729 CDS
T03446
Name
(RefSeq) endoribonuclease Dicer homolog 3a-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pxb03036
]
103927729
Chromosome and associated proteins [BR:
pxb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
103927729
microRNA pathway
RISC loading complex
103927729
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
ResIII
Helicase_C
PAZ
dsrm
DND1_DSRM
SWI2_SNF2
SNF2-rel_dom
Dicer_dsRBD
HEAT_ECM29
LPP20
Motif
Other DBs
NCBI-GeneID:
103927729
NCBI-ProteinID:
XP_018498185
LinkDB
All DBs
Position
Unknown
AA seq
1637 aa
AA seq
DB search
MESNGIMGPTVLDQFIPRRYQVRVFEVAKRKNTIAVLETGAGKTMIAVMLIKHVAEEMMR
IMPSSGDKKLIIFLAPTVYLVTQQYKVIKNSTTLEVEEYYGAKRVDEWTRSCWETEANTH
DILVMTPQVLLDAMRNAFLNLEMFSLIIFDECHRATGNHPYTKIMKDFYHQSVSRPKIFG
MTASPVIRKGVSSAMDCEAQISALESMLDAQVYTVEDRTEIETFVPSAVHKCRFYKQAPS
AYSDLKEKMEALLSKYASELELQEQMPSQFQDINDKIKMLQKRLHNDHMKILYCLDDLGI
VCAYEAVKICLENVPDAEEECQFYRECSLHLKRFLDEVLLMIAGFLQPGCELHANFESDY
TEACDLGFLSPKLYELLQIFQSFGTGSKVQCLIFVERIITAKVIEIYVKKVRCLSHLTVS
YVTGSNGSADALSPKLQKETMESFCSGKVNLLFATDVVEEGIHVANCSCVIRFDLPKTVR
SYIQSRGRGRKNDSQYILMLERSNKKQIDQMFDIIRSEHSMTDTSRNRDPEVCTLKACCF
EETKLYRAKVTGASVTTDSSVSLIYRYCDKLPGDRYFTPKPTFDFGISEGLYQCRITLPP
NAAFLTTVGPLSSNTHLSKQLVCLEACKKLHEMGALDDHLLPLVQEPLEDDLIPERRGLS
AGAGTTKRKELHGTTSIRALCGTWGEKLDTVFEAYKFDFSCSIVDETYSGFVLLIELKLD
DDVGNIEMDLQLVSRMVKSSVSSSGKCYLSAEQVTQAKRFQEFFFNGVFGRLFFGGESEG
TTREFLLQTQTKSLWSSAYMYLLLPVDTLDSSKVNWRGINSSVNVVEFLKKQYSTHSKCF
NGDHSELPLSRTGSSMTESKAANHIHFANSSIDADNLQDMLVLAIHTGRIYSIIEVVRGK
SAESSLEENVDDASSTYSYSQHFKTKYGISLVYPGQPLLRLKQSHNPHNLLGAEGASSQD
GRVIKEQAHVRMPPEILVGIDFQGDVLRSCYLLPSVMYRLESLMLASQLREEINGQTNNF
KISSSLILEALTTLRCCEDFSLERLELLGDSVLKYAVSSYLFLRYPEKHEGQLTARRTRV
ICNSNLHKLGIQRKIQGYIRDSAFEPRRWAAPGQRSRFPDPCKCGVDTLEVPLDSRFQTV
EPVKVGKFCDSGHRWMNSKTIADCVEALIGAYYVGGGLFAALHVMKWLGIDSDFEPKLGA
EAITRASLRSYYPKHQDIAALELKLGYQFSVKGLLQEAITHASQQKLGARYCYQRLEFLG
DSVLDVLITQYLYHSHTTINPGQLTDLRSAAVCNENFARAAVRRKLHPHLQHCSGLLLNH
ITEYEKLCTAEALNTTSLLEDVKGPKALGDMVESIAGAIYMDSNLDLNKVWRVFKPLLSP
IVTPSTLQLHPLRELTELCGSLGYFVKENCTKEDSLEHVEMTLQLEDGLLVGNGYDRSKK
AAKQKAARQLLKELQGCHSVFKRRKLDPDRVDELSSEGMEIEPCSQLNDTHSSESINRIE
SPYAESRTGPTPTNFGPNKIYSHNIVTPSLQAIAPISTRKGAARASLFELCKRMQWPMPT
FKTTEHKSRTLIEFGEGSEKRIGFNSYASEISLQIPNYGTVVCRGDPRADKKSSYDSAVV
ALLYKLQRQGKLTIGCS
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atggagtctaatggtatcatggggcccactgttcttgatcagttcatccctagaaggtac
caagtgagagtgtttgaggttgcaaagcggaagaacacgattgcggtgctggaaacggga
gctgggaagacaatgatagctgtgatgctcatcaagcacgttgctgaggagatgatgagg
atcatgccctcctctggagataaaaagttgatcattttcttggctccgacagtttatctt
gtcactcaacaatacaaggttattaaaaattccacaactcttgaagtggaagagtactat
ggagccaagcgagtggatgaatggacccggagctgttgggaaacagaagctaatacacat
gatatactggtcatgacaccacaggttctcttggatgccatgaggaatgctttcttaaac
ttggaaatgtttagcttgataatctttgatgaatgtcatcgcgctaccggcaatcatccc
tatacgaaaataatgaaggatttttatcaccaatctgtgagccggccaaagatttttggg
atgacagcgtcccctgttataagaaaaggtgtctcatccgccatggattgtgaggctcaa
atatctgcacttgaaagcatgttggacgctcaggtttacactgtagaagacaggactgaa
atcgaaacatttgttccctcagcagtccacaaatgtaggttttacaagcaagcaccatcc
gcctattcggatctgaaggaaaagatggaagctttgctgtcgaagtatgcttctgagttg
gagttgcaagagcaaatgccaagtcagttccaagacatcaatgacaagataaagatgttg
caaaagcggttacacaatgaccacatgaagatcttgtactgcctcgatgaccttggcatt
gtatgcgcatatgaggctgtcaaaatttgtctagagaatgtccctgatgccgaagaagag
tgccaattctatagagaatgttctttgcatttgaaaagatttctcgatgaagtcttgctt
atgattgctggatttcttcaacctggctgcgaacttcatgcaaactttgagtctgactat
acagaggcgtgcgatttgggtttcttatctccaaagttatacgaacttcttcaaattttc
cagtcatttggaaccggtagcaaagttcaatgcctcattttcgtagagcgaattattaca
gctaaagtgattgaaatatatgttaagaaagtgcgttgcttatctcacttgacggtttca
tacgtgactggaagtaacggatcagctgatgcgctatcaccgaagctgcaaaaggaaact
atggaatccttttgctccgggaaggtcaatctgttattcgctacggatgtagttgaggag
ggaatacatgttgcaaactgttcctgtgtgattcgttttgacttgcccaagaccgttcgt
agttatatccagtcccggggaagaggtcgaaaaaatgactcccaatatatcctaatgctt
gaaaggagcaacaagaagcagatagatcaaatgttcgacatcatcaggagcgaacattcg
atgacggatacatctagaaacagagatcctgaagtatgcaccttaaaagcttgttgtttt
gaggaaacaaaattgtatcgtgcaaaagttactggagcatcagttacaacggattcgagt
gtcagtcttatatatcgatactgcgacaagctcccgggagataggtactttactccaaaa
ccaacttttgatttcggaatttctgaagggttgtaccagtgtaggattacattacccccg
aatgcagcttttctaacaacggtcggtcctctgagcagcaacacgcatttgtccaagcag
ctagtgtgtttggaagcttgtaaaaaactccatgaaatgggagccttggatgatcatctt
ctcccgcttgtccaagaacctttagaagatgatctaattccagaaagaagaggattatct
gctggtgcaggaacaacgaaaagaaaagaattacacggcacaacatccatccgggcatta
tgtggaacttggggagaaaaacttgatactgtttttgaggcctataagtttgatttctcg
tgtagtatcgttgatgagacatattcaggatttgttctactaatcgagttaaaactcgat
gatgatgtgggaaatatcgaaatggatcttcaactcgtctcaaggatggttaaatcttcg
gtctcttcaagtggaaaatgttatctgagtgcagaacaggtgacgcaagccaagcgcttt
caagaatttttcttcaatggtgtgtttgggagattgtttttcgggggtgaatcagaaggg
acaacgcgagaatttttacttcagacacaaacaaaatcactctggagttcagcatatatg
tatttgcttttacccgttgacacattggactcttcaaaagtgaactggagagggatcaat
tcttctgttaatgtggtagaatttttgaagaaacaatactccacgcattccaagtgtttt
aatggtgatcacagcgagttgccactttctaggactggttcatccatgacagagtcgaag
gctgcgaatcatatccatttcgctaatagttcaattgatgccgataatctccaagatatg
ttagttttggctattcacacaggacgtatctattctatcatcgaagttgtccgtggaaaa
tctgctgaaagttctttagaggaaaatgttgatgatgcatcatcgacatacagttattct
cagcacttcaaaacaaagtatgggatttcgcttgtttatcccggacagcctttgctgcgg
ttaaagcaaagtcataatccgcataacttgcttggtgccgaaggtgcttcgtcacaagac
ggtcgagtaatcaaggaacaagctcatgttcgtatgccacccgagatcttagtcggtatt
gattttcagggggatgttctacgatcatgttacttgctaccgtcagtaatgtaccggctg
gagtcactaatgctagctagccagctcagagaagagatcaatggccaaactaacaacttt
aaaatatcaagttcattgattctggaagcactcacaacacttaggtgttgtgaagatttc
tcgttggaacgtttggagttgctcggagattcagttctcaagtacgctgtgagctcctac
ctttttctcagatatcctgagaaacatgaagggcaactaacagctcggcgtacaagggtg
atatgtaactccaacctgcataaactaggaatccaacggaagatacagggatatatacgt
gacagcgcatttgaaccacgccgttgggcagctccagggcagcggtctagattccctgat
ccgtgtaaatgtggagtggacaccttagaagtgcctttggacagcagatttcaaactgta
gaaccggtaaaggtcggaaaattctgcgatagcggccatagatggatgaactcgaaaacc
atagcagattgtgttgaggccctcataggagcctactatgtcggcggaggactgtttgct
gcactacatgtaatgaagtggctcggtattgattctgattttgaacccaaattaggcgct
gaagccattacgagggcttccctccgatcttactacccaaaacatcaggacatcgctgcc
ttggagttgaagcttggctaccaattttcggttaaaggtctgttacaggaggccataaca
catgcctctcagcaaaaactaggtgctaggtactgttaccagaggctcgagtttcttggc
gactccgtgttggatgtgctaatcacacagtatctctatcatagccacacaactattaat
ccggggcagttgacagacttgcgatcagctgctgtttgtaacgaaaactttgcccgagct
gctgtgagaaggaaacttcacccacatcttcaacattgctccgggttacttctgaatcat
atcacagagtatgagaagttgtgtactgctgaagctctcaacaccaccagcctactcgaa
gacgtaaaaggccctaaagctcttggggacatggtggaaagcatagctggggctatatac
atggacagcaatctcgatcttaacaaagtatggagggtgtttaaaccgctattatctccg
atcgtgaccccttccactctgcaattacatccgctgcgtgaattgaccgagttatgtggt
tctctcgggtactttgtgaaagaaaattgtactaaagaggattcattggagcatgtggaa
atgactttgcagctggaagatggtcttttggttgggaatgggtacgatcggagcaagaaa
gcagctaaacagaaagcagctcgtcaacttttgaaggagctccagggttgccattcagtg
tttaaaaggagaaaacttgatcctgaccgtgtagatgagctctcttccgaaggcatggag
attgaaccctgcagccaactgaatgatactcattcttcagagtcgatcaatcgaatcgaa
tcaccatatgcagagtcgagaacaggtcctaccccgaccaattttggtcctaacaaaatc
tacagtcacaacattgtaaccccaagtttgcaggctatagctccgatcagcacgaggaaa
ggagcagctcgggcttctctctttgagctgtgtaagagaatgcagtggccaatgcctaca
ttcaaaacaacagagcataaatcgagaactctaatcgaatttggtgagggctctgaaaag
agaatcggtttcaacagctacgcatcggaaataagtttgcagataccaaactatgggact
gttgtatgcagaggagatcctagagctgataagaagagttcatatgactctgcagtagtt
gccctgctttacaagcttcaacgacagggaaaacttacaattgggtgctcttga
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integrated database retrieval system
