Pyrus x bretschneideri (Chinese white pear): 103928920
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Entry
103928920 CDS
T03446
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
103928920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pxb03400
]
103928920
Enzymes [BR:
pxb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
103928920
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
103928920
DNA repair and recombination proteins [BR:
pxb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
103928920
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
TFIIF_alpha
PBP1_TM
Motif
Other DBs
NCBI-GeneID:
103928920
NCBI-ProteinID:
XP_009336312
LinkDB
All DBs
Position
Unknown
AA seq
423 aa
AA seq
DB search
MHHFPDSLHSQPSTKKRANSSGEMPELPEVEAARRAVEEHCVGKKITKALIADDSKVIDG
VSRADFEASLLGKTIVSAHRKGKNMWLCLDSPPFPSFQFGMAGAVYIKGVAVTKYKRSAV
KDTDEWPSKYSKFFVELDDGLEFSFTDKRRFARVRLLKDPTSVPPISELGPDALLEPMTV
DELFECFSKKKIAIKTLLLDQSVISGIGNWVADEVLYQARIHPEQGAASLSKENCAALHK
SIKEVLEKSLEVGADSSQFPSDWIFHSREKKPGKAFVDGKKIEFITVGSRTSAFVPELQK
LSGPQASKAATTQANQKKGRGDVVNDDVDEAASDEEANENEKSKKGRKPKGQGKRASAKR
KSKESDDEDKDSDDDADDNDDHQDEDQKKKSRKGVNSKQSKAEKTSKAKVQTSQSGKKLK
KGK
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgcaccattttcctgactcactccactctcaaccctcaaccaaaaagcgcgcgaacagc
agcggcgaaatgccggagctaccggaggtggaggcggctcggagggccgtagaggaacac
tgcgtagggaagaagataacgaaagcactcatcgccgacgactccaaagtcatcgatgga
gtctcacgcgccgacttcgaggcctctctcttgggaaagaccatcgtctccgcccaccgc
aagggcaagaacatgtggctctgcctcgactctcctccctttccttccttccaattcgga
atggcgggtgctgtatatattaaaggggtcgccgtcacgaaatataagaggtctgctgta
aaggacactgatgagtggccttccaagtattccaagttctttgttgaattggatgatggt
ctggagttctctttcactgacaagaggcgatttgctagagtccgcttgctgaaagatcca
acttctgtgccccccatatctgagcttgggcccgatgctctcttggagcctatgacagtg
gatgaactttttgaatgcttcagcaagaagaaaattgcaattaagaccctgttgcttgat
cagagtgttatttcaggaattggcaattgggttgctgatgaagtactctaccaagcaaga
attcatccggagcaaggtgctgcgagcctgtcgaaagaaaattgtgcagctttacacaag
agcatcaaagaggtccttgaaaaatccctggaagttggagcagatagtagtcaatttcct
agtgattggatttttcattcccgtgaaaagaagcctggaaaggcttttgttgatgggaag
aaaattgagtttatcacagttggtagcaggacttcagcatttgtaccagagcttcagaag
ttaagtggaccgcaagcttccaaagcagcaactacacaagctaaccagaaaaaagggcgt
ggtgatgttgttaatgatgatgttgatgaagcagcaagtgatgaagaagccaatgaaaat
gaaaaatcgaagaaggggaggaagcctaaaggtcaaggtaagagggcgtcagcgaaaaga
aaatcaaaagagagtgatgatgaagacaaggacagtgatgatgatgctgacgacaatgat
gaccatcaggatgaagatcaaaagaagaaatcaagaaaaggtgtcaatagtaagcaatcc
aaggcagagaagacatcaaaggcaaaggtgcagaccagtcaaagtggtaagaagctgaag
aaaggaaaatag
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