Pyrus x bretschneideri (Chinese white pear): 103933278
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Entry
103933278 CDS
T03446
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03013
Nucleocytoplasmic transport
pxb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103933278
03015 mRNA surveillance pathway
103933278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103933278
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103933278
5.6.2.5 RNA 5'-3' helicase
103933278
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103933278
mRNA cycle factors
Common to processing body (P body) and stress granule
103933278
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
NPHP3_N
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
103933278
NCBI-ProteinID:
XP_009341223
LinkDB
All DBs
Position
Unknown
AA seq
1267 aa
AA seq
DB search
MDSQPNNLFDTASQPDTANDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTASDSLSEPA
DRDRGGGGVGSDHQSDASPVSAAPGGATKARAGGSGSNAGNNQVVDVLTAGMSVLNFEDT
GDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMN
WDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKSNPDASLEDLEKP
GVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIA
YFVFTKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVD
LNHGFSVDFVWKSTSFDRMQGAMKAFAVDETSVSGYIYHHLLGHEVEVQMVRNSLPRRFG
APGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDMSEKSELHKLQQLKD
EQGELSSNDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQAT
EPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVILGVKPIRLQVQY
RMHPALSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNSLLTHYKEHECLVEGPLNNLKQSMVQFPKPKKIYNDRRLFYGGGPGVIPNDSFGSV
ASAGQSADRRSNRGRAGSYLPPGPPNGTHKPGVHPAGYPLPQAPLSPFHGGPLSQPYAIP
TRGAVHGPVGAVPHVPQPGSRGFGAGRGNAGAPIGGHLPHQQGTQQNVGNMGSTFNIPSL
KNPNSQPSVGGPLSQHGFVNNMPVQGPSQTFRDGFSMAGMSQEYLGDDFKSQGSHVPYNV
ADFSTQASQSGYAVDYVTQGAQGGFPGNFLNQNSQAGYSRLGTGNDFMSQDYMPHGSQGL
FTQVGFNDPSQDGVANANQLQSQGFMNSLYSQPFAHYNTQPMNLQAPQQQQQQQGQTSQN
QKIHYNG
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggattcacagcccaacaacctctttgacacggcgtcgcagcccgacaccgccaatgac
gcctacaccttcctcgaattcaacacccaaggcgaggactttgactacccggagttccgc
gacccgattcggtcccctgtcgcctggcccaccgcttcagattccttatcggaacccgct
gaccgtgaccgtggcgggggtggagtcggatcggaccaccagtctgatgcatcaccggtt
tcagctgccccgggcggcgccacaaaggctagggcaggtgggtcgggcagtaacgccggg
aataatcaggtggttgacgtcctaactgctgggatgagtgtgcttaactttgaggacact
ggggatgacgacaattacgagtttggaaaaggggatttcacggaacatgcgtgccggtac
tgcggcgtgtcgaacccggcgtgcgttgtgaggtgtaatgtgccttcgtgtcgaaaatgg
ttctgtaattcaagggggaatacctccggctcccatattgtgaatcacctggtccgagcc
aaacacaaggaagtctgtcttcataaagatagcccattgggagaaacaatccttgaatgc
tacaactgtggatgtcgtaatgtattccttctgggatttatttcagccaagacagagagt
gttgttgttcttctttgtagggaaccctgcttaagtgttaatgcattgaaggatatgaac
tgggatctgagccagtggtgtcccctgatagatgataggtgtttcttgcagtggcttgtt
aaggtcccgtctgaacaggagcagctaagggcgcgccaaatcagtgctcaacaaataaat
aaagtagaagaactttggaagagcaatcctgatgcttcccttgaagatctcgagaagcca
ggtgtggacgatgaaccccaacctgtggccttgaagtatgaagatgcttaccagtatcaa
aatgtgtttgcaccacttattaaacttgaagctgactatgataaaatgatgaaagaatct
caaagcaaagacaatgtcacaattcggtgggatattggtcttaacaagaagcgtattgct
tattttgtgtttacaaaggaagacaatgagttgcgccttgtacctggtgatgagttgcgg
cttcgttattctggagatgcagctcatccagcatggcagtcagtgggacatgttatcaag
ttaactgcacaagaagaggttgcacttgaacttcgtgccagtcagggagttccagttgat
ctgaaccatggcttcagtgttgactttgtctggaagagtacaagttttgatcggatgcag
ggagctatgaaagcttttgcagtggacgagacaagtgttagtggatatatttatcatcat
ttgttaggccatgaagtagaggttcaaatggtccgtaattcattgcctcgtcgttttggt
gcacctggtcttccggagctcaatgcatctcaagtttttgctgtaaagagtgtccttcag
aagcctataagtttgatccagggtccacctggcacaggaaaaactgtgacttctgcagca
attgtgtatcacatggctaaacaaggccagggacaggttttggtgtgtgctcctagtaat
gtggctgtagaccaactagctgagaagataagtgcaactgggttgaaggttgttagactt
tgtgcaaaatcaagggaagctgtaagttctcctgttgagcatttaacccttcattaccag
gttcgtcatcttgacatgtcagaaaagagtgaacttcacaagctgcaacaattgaaggat
gagcaaggagaattatctagtaatgatgagaaaaaatataaggcactgaagcgggcaacc
gagagggagatttctcaaagtgctgatgtcatttgttgcacatgtgttggtgctggagat
cctcgattggccaattttaggttccgtcaggtacttattgatgagtcaactcaggctaca
gaacctgaatgcctgattcctttggttcttggggcaaagcaggttgttcttgttggagat
cactgccagcttggtccagtcattatgtgcaagaaagcagctcgtgctgggcttgcccag
tctctttttgaacgcctcgttatacttggtgtgaaaccaattagattgcaggttcaatac
cgaatgcatccagccttgtcagaatttccatctaacagcttctacgagggcacacttcaa
aatggagttaccatcaatgaaaggcaatcatcgggcattgattttccttggccggttccc
aatcgtcccatgttcttttatgtacagatggggcaagaggagataagtgctagtggaaca
tcctatctgaacagaactgaggctgctaacgttgaaaagattgtcacaacattcttgagg
agtggcgtagtccctagtcagattggagtgatcacaccatatgagggacagagagcttat
attgtgaactatatgtcgagaaatggtgctctcagacagcaactttataaggaaattgag
gttgccagtgtagattcatttcaaggacgggaaaaggattatatcatcctttcgtgtgtg
aggagtaatgagcatcagggcatcggattccttaatgatcctcgcaggctcaatgttgct
ctaacacgcgctcgatatggtattgtcattcttggaaaccctaaagttcttagtaagcag
ccactgtggaatagcctgttgactcattacaaggaacacgagtgcttggttgaggggcca
ctaaataacctgaagcagagtatggtgcaatttccaaagcctaaaaagatctacaatgat
cgtcgcctattctatggtggtggtcctggagttatccccaatgacagttttgggtctgtt
gcctcagctggccaaagtgctgacagaagaagtaatcggggtagggcaggttcttaccta
cctcctggcccacccaatggtacccataagcctggtgtacatccggctggatatccatta
cctcaggcacctctttcgccatttcatggaggacccctttctcaaccgtatgctattcca
actcgtggagctgtgcatggaccagttggagctgttcctcatgtccctcaacctggaagt
cgtggttttggggcaggacgtgggaatgccggtgctccaattggcggtcatcttccgcac
cagcaaggcacacaacaaaatgttgggaatatggggtctaccttcaacattccttctctt
aaaaatccaaatagccaaccatctgttggtggtcccttatctcaacatggatttgtcaat
aatatgccagttcaagggccaagccaaacgtttcgtgatggattttccatggcgggcatg
tctcaggaatatttgggtgatgactttaaaagtcagggatcacatgttccttataatgtt
gctgacttctccactcaggcttctcaaagtggatatgctgttgattatgttactcaagga
gcacaaggtgggtttccagggaactttctgaaccagaactctcaagctggatattctcga
ttgggtactgggaatgacttcatgtctcaggactacatgcctcatggatcacaaggccta
tttactcaggtgggctttaatgacccatcacaggatggagttgcaaatgccaatcaactt
cagtctcagggctttatgaactcactgtactctcagccttttgcccattacaacacacag
ccaatgaacttgcaggccccacaacaacaacaacagcagcagggtcagacctcccaaaat
cagaaaatccactacaacggttaa
DBGET
integrated database retrieval system
