Pyrus x bretschneideri (Chinese white pear): 103933812
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Entry
103933812 CDS
T03446
Name
(RefSeq) protein NRDE2 homolog isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103933812
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103933812
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NRDE-2
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
Suf
Zona_CL2
Motif
Other DBs
NCBI-GeneID:
103933812
NCBI-ProteinID:
XP_009341771
LinkDB
All DBs
Position
Unknown
AA seq
1165 aa
AA seq
DB search
MEDDGQPSDGEAAASAAAKTSLFPVVPASQQITSVPQWLSNTSFTTQLSAINDAVAAHFK
PEPPPSPPAPQEHEQGDVRSQAQPYEMLESSSGSDRSDERERTKKKKKSKRRKKRRRERS
VERGSGAFADYGSRKSGVRVWADSETKPSKDYYLDSHGDRDNLAFGSLYRMDIARYKPYG
LAELSRSDFRGLSRWNKTGSTLDRDADVEALDGKLKSAGRYWSAKYMALERHKNLKRARI
LVPRDLDATVSGDFIPLTDAQTSDDECVDGDDPLSRTSVVEESWEDEVLRKTCEFNKLTR
EHPHDEKVWLDFAEFQDRVADMQPQKGARLQILEKKISILEKAAELNPDNEELLLPLLKA
YQRRDNSDVLISRWEKILIQHSGSYRLWREFLRVIQGEFSRFKVSDMRKMYTHAIQALAS
ACRKHIRQVCQAENHPPDAATVQLELGLVDIFLSFCRFEWQAGYQELATALFQAEIEFSL
FCPSLLLTEQSKQILFEHFWNSDGARVGEEGALGWSTWLEKEEENRQRVIREETAHDDEG
GWTGWSEPLAQNKENSIETEKESESNVVVEEFQEELEDEDVKQEEDTETLLKMLGIDVDV
GASGEIKDSSTWIKWSEEELSRDCVQWMPVRTRAAVSHNVGTPDGETDDHLSRVIMYEDV
NEYLFSLSSSEARLSLVLQFVDFFGGKSSQWISTNSSTWAEKVLSLEALPDSILQTLRKV
HDFLIKTQGSSSNFSLESLLGTTNDIYRRTDMMKFLRNATLLCLSAFPRHFVLEDAALVA
EELSALNLNPSSRSVTPCRALAKFLLKSDRQDVLLCGVYARREAFHGNIDHARRVFDMAL
SSIEGLPLELRSNASLLYFWYAETELANEHGNGCESSLRAMHILFCLGSGSTYSPYKSHP
SNLQLLRARQGFKEKIRTVQMALMRGVIDDQSVALICSAALFEELTSGWAAGIEVLDQAF
ALVLPERKSRSYQLEFMFSFYMKMLWKHHGQSSLSKCWESILQGLQIYPCSPELFSDFIK
VGHLYTTPNKLRWVFDDHCHKKPSVVVWLFALSFELSKGGSEHRIRGLFERALGDDRFHN
SVVLWRCYIAYEMNMAKNPSAARRNFFRAIHACPWSKKLWLDGFMKLNSILSAKELSDLQ
EVMRDKELNLRTDIYEILLQDEFVS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacggacaaccgtcggatggagaagcagcagcatccgcagcggcaaaaacg
tcactcttccccgtcgtacccgcctctcagcaaatcacgagcgtcccgcagtggctttct
aataccagcttcaccacccaactctccgccataaacgacgccgtcgccgcacacttcaaa
cccgagcctccgccgtcaccgcccgcgccgcaagaacatgaacagggggatgtgcggtca
caagcgcagccgtacgagatgctggagtcttcttctggatccgataggagcgacgagaga
gagaggacgaagaagaagaagaagagtaaaaggaggaagaagaggaggagagagagatcc
gtcgagagaggaagcggagcgttcgccgattatgggtcgaggaagtccggtgttcgggtt
tgggccgactccgagactaaaccttccaaagattattacctcgattctcatggggaccgt
gacaatttggcctttggaagtttgtacagaatggacattgctcgctacaaaccttatggt
cttgctgagctatccaggtctgattttcgaggtttgtcccggtggaacaagacaggttcg
acattggatagagatgctgatgttgaagcattggatgggaaactaaaatctgctggtcga
tattggtctgcaaagtacatggctttggaacggcataagaacctaaagcgtgctcgtata
cttgtccccagagaccttgatgctacagtttccggagattttattcctttaacagatgct
caaacatctgatgatgaatgtgttgatggtgatgatccactctcgagaacttcagtggtt
gaagagtcttgggaagatgaagtgctacgcaaaacatgtgagtttaacaaactgacgagg
gagcacccccatgacgaaaaggtttggttggattttgcagagttccaagacagggttgct
gatatgcaaccccagaaaggtgctcgcttgcagattctggaaaaaaagattagcatactg
gagaaggcagcagagcttaacccagataatgaagaactgttgcttcctcttctaaaggct
tatcaaaggagggacaactctgatgtattaattagtagatgggaaaagatacttatacaa
cattcaggaagttacaggttgtggagagaatttttgcgcgtcattcaaggggagttctcc
aggttcaaggtttcagacatgagaaaaatgtacacacatgcaatccaggctctagcttct
gcttgcagaaagcacattaggcaggtttgccaagcagaaaaccatcctccagatgctgct
acagttcaactagaacttggtctggttgatatatttctcagtttttgtaggtttgaatgg
caggctggctatcaagagttggccactgctctatttcaggctgaaattgaattcagtttg
ttttgtccatctttactcctcaccgaacagagtaaacagatactgttcgagcacttttgg
aacagtgatggtgcaagagttggagaagaaggtgctcttggttggtctacatggttggag
aaagaggaagagaataggcaaagggttatcagagaggagactgcacatgatgatgaaggt
ggctggacaggttggtcagaaccactcgcacaaaataaggaaaatagtatagagaccgaa
aaggagtccgaaagtaatgtagtggttgaggagtttcaagaggaacttgaggatgaagat
gtcaagcaagaagaagatactgaaactttgctaaagatgctagggattgatgttgatgtt
ggtgctagtggtgagattaaagacagttcaacctggattaaatggtcagaagaagagtta
tcaagagattgcgttcaatggatgcctgttcgtacaagagctgctgtctctcataatgtt
ggtacacctgatggagaaacagatgatcacctttcgagagtcataatgtatgaagatgtc
aacgaatacctgttttctttgagctcatctgaggcccgtttatctctagtgttacaattc
gttgatttctttggcgggaaaagctctcaatggatatctacaaacagctccacttgggcc
gagaaggtccttagcttggaggcattgccagattcgatattacaaactttgagaaaggtt
catgattttttaatcaaaacacaaggcagttcaagtaatttcagcttggaatctctcttg
ggtaccaccaatgacatctacagaagaacagacatgatgaaatttcttcgtaatgctacc
ttgctctgtttatctgcttttccacgtcattttgtcctagaagacgctgctttagttgct
gaagagctatctgctttgaatttaaatccttccagccgttcagttaccccatgccgagct
ctggcaaagttcctcttaaagagtgaccgtcaggatgtgttgctatgtggagtttatgca
agaagggaggcttttcatgggaatattgatcatgcaagaagagtatttgacatggcattg
tcatctattgaagggcttcctttggaattacggtcaaatgcttctcttctatatttctgg
tatgctgagacggagcttgctaatgagcatggcaatgggtgtgaatcatcactacgtgca
atgcatattttattttgcttaggaagtggttctacgtatagtccgtataaatctcaccca
tcaaatttgcaattactgagagcacgccaaggtttcaaagaaaaaataagaacagtacaa
atggcattgatgcgaggtgttatagatgatcaatctgttgctctcatatgttctgctgct
ttatttgaagagttaacctctggatgggctgcgggtattgaagttctagatcaggctttt
gcattggtgcttccagagagaaagagccgtagttatcaacttgaatttatgttcagcttt
tatatgaagatgctttggaaacatcatggtcagtcaagtctatcaaaatgctgggagtca
atattgcaggggcttcaaatatatccatgcagccctgaactatttagtgatttcatcaaa
gttggccatctttatacgacacctaataaactgcggtgggtgtttgacgaccactgtcac
aagaaaccttctgtggtcgtctggctttttgcattgtcatttgaattgagtaaaggagga
tcggagcataggatccgtggattatttgagagggcattgggagatgataggtttcataac
tcagttgttctttggcgatgctacattgcatatgagatgaacatggcaaaaaatccttca
gcagctaggagaaacttcttccgggctatccatgcctgcccatggtcaaaaaagctatgg
cttgatggttttatgaaattgaattccatcttatctgcaaaagagctgtcggatctccaa
gaagtcatgcgggataaggaactgaatctgaggacggacatttacgaaattcttttgcaa
gatgagtttgtatcgtaa
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