Pyrus x bretschneideri (Chinese white pear): 103935215
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Entry
103935215 CDS
T03446
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103935215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103935215
03012 Translation factors [BR:
pxb03012
]
103935215
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103935215
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103935215
Translation factors [BR:
pxb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103935215
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
DUF5128
T2SSE
Cas3-like_C_2
FoP_duplication
AAA_19
Rad17
NACHT
Motif
Other DBs
NCBI-GeneID:
103935215
NCBI-ProteinID:
XP_009343252
LinkDB
All DBs
Position
Unknown
AA seq
1043 aa
AA seq
DB search
MSVRFLLGATKSCPLPRHLLAAPKIFAFRPGISTLAMSGRTNFQGGRRGGPNSGGGRRGR
GGGGRGGGGRGGGGGGGRGGEQRWWDPVWRAERLRQQAVQMEVLDETEWWGKMEQMKNGA
EQEMVIKRNFSRNDQQILYDMAYQLGLYFHAYNKGKALVVSKVPLPDYRADLDERHGSTQ
KEIKMSTETANRVGSLLHSSPSQGEISVNGPSGSGQGNRQTSASVITSKPVAQLEPDNVN
EKEKLSLQLKEKQEKMKVSNSLKAMQSFREKLPAFKMKSEFLKAVSENQVLVVSGETGCG
KTTQLPQFILENEISRLHGADCNIICTQPRRISAVSVAARISSERGENLGETVGYQIRLE
SKRSAQTRLLFCTTGVLLRQLVQDPELTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRP
DLRLILMSATINADLFSRYFGNSPTIHIPGLTFPVAELFLEDILEKTRYAVKSEFDNFEG
GNSRRRRQQDSKKDPLTELFEDADIDVQFKNYSTATRKSLEAWSGSQLDLGLVEATIEHI
CRNERDGAILVFLTGWDDISKLLDKIKGNRFLGDPTKYMVLPLHGSMPTVNQREIFDRPP
PNKRKIVVATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRG
RAGRVQPGVCYRLYPKMIHDAMLQYQLPEILRTPLQELCLHIKSLQLGAVGSFLAKALQP
PDSLAVQNAIELLKTIGALDDTEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTI
AAALAHRDPFILPINRKEDADAAKRSFAGDSFSDHIALVKAFEGWKDAKQNGAGAGKSFC
WENFLSPVTLQMMEDMRIQFLDLLSNIGFLDKSRGANAYNQYSHDLEMVCAVLCAGLYPN
VVQCKRRGKRTAFYTKEVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTTSIYIRDSTNLS
DYALLLFGGSLIPSKTGEGIEMLGGYLHFSASKSVLELIRKLRGELDKLLNSKIDNPGLD
ISSEGKAVVSAVVELLHSQNIQY
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgcgcttcctccttggcgcaacaaaaagctgcccgcttccccgacacctcctc
gccgcgcccaaaatcttcgcgtttcgccctgggatctcgacactcgccatgtccggacgc
accaacttccaaggcggtcgccgaggcggccctaactctggcggaggccgccgcggtcgc
ggtggcggcggcagaggtggaggcggtcgtggaggtggaggtggaggcggccgcggcgga
gaacagcgttggtgggacccggtatggcgcgcagagcgactgaggcagcaggctgtccag
atggaagtgcttgatgagacggaatggtggggaaagatggagcagatgaagaacggagcg
gagcaggagatggtaattaagcgtaattttagccggaatgatcagcaaattctatatgac
atggcttatcaactggggctttacttccatgcatacaataaagggaaggctttggtggtc
agcaaagttccattgccggactaccgggcagatcttgatgagcgccatggttccacacag
aaagagattaaaatgtctacagagactgccaatagagttgggagtcttttgcacagctcg
ccgtcacagggggaaatatctgtcaatgggccttctgggtcagggcagggaaacagacaa
acttcagctagcgtaattacgagtaaacctgttgcccagttagagcctgataatgttaat
gagaaagagaaactcagccttcaacttaaggagaaacaggaaaaaatgaaggtgagcaat
agtttaaaagcaatgcaatcgtttcgagaaaagcttcctgctttcaaaatgaaatccgag
tttctgaaagctgtttcagaaaatcaggtcttggtagtctctggggagacaggttgcgga
aaaacaacgcagcttccacaatttattctagaaaatgagatctcacgtctgcatggtgct
gactgcaacataatatgcacacaacctcgtcgtatttctgctgtatctgttgcagctcgt
atatcctctgaaaggggagagaatcttggtgaaactgttggttatcagatccgtcttgaa
tcaaagcgctctgctcaaacacggctgttattttgcaccactggagtgttacttcgacag
ttggttcaagacccagaattaacgggcgtgagccacttgctggttgatgaaattcatgaa
agaggcatgaatgaggactttttactcataatcttgcgtgaccttcttcctcggcgtcca
gatctacgattaattctaatgagtgctaccatcaatgctgacttgttctccagatacttt
ggaaattccccaacaatacatataccaggattaacttttcctgtggcagagttatttctg
gaagatattctggagaaaactcgttacgctgtcaagtcagagtttgacaactttgagggg
gggaattccaggagaaggagacagcaagattccaagaaagatcctttaactgaattattt
gaggatgccgatattgatgttcagttcaaaaattatagcacagctacaagaaagtctctt
gaagcttggtctggttcacagcttgatttggggctggtggaggcgacaattgaacatata
tgtcgcaatgagagagatggagcaattcttgtattccttacgggctgggatgacatatca
aagttacttgacaaaattaagggaaatagattccttggagatcccacaaaatatatggtt
cttcccctgcatgggtcaatgcctaccgtcaatcaacgagagatatttgatcgtcctccc
cctaataaaagaaaaattgtggtagcaacaaacatagccgagagtagtatcaccatagat
gacgttgtgtatgtcatagactgcggaaaggcaaaggaaaccagttatgatgctttaaac
aagttggcttgtctattaccatcatggatttcaaaggcttcagcacatcagaggcgaggg
cgtgctggccgtgtgcaacctggagtttgttacagactatatccgaaaatgatccatgat
gcaatgctccaatatcaattacctgaaatcctccggacgccgttgcaagagctatgcctc
cacatcaaaagtttgcaacttggagctgttgggtcatttttggcaaaggcacttcagcca
ccagattctcttgcagttcaaaatgcaattgaacttctcaaaaccattggagctttagat
gacacagaggagcttaccccgcttggtcgccatctttgcacgctaccattggatccaaac
attgggaagatgcttttaatgggttctatatttcaatgcctcaatcctgctttaacaatt
gcagctgctcttgctcatcgtgacccatttatactaccaataaataggaaagaggatgct
gatgctgcaaagaggtccttcgcgggtgattctttcagtgatcacatagctcttgtgaaa
gcttttgaaggatggaaagatgcaaaacaaaatggagcgggagcaggaaagtcgttctgc
tgggagaactttttatcccctgtaacattgcagatgatggaagatatgaggatccagttt
cttgatctattatcaaatattggctttcttgacaaatccaggggtgctaatgcttacaat
caatacagccatgacttggagatggtgtgtgcggtcctgtgtgctgggctctatccgaat
gtcgttcagtgtaaaagaagaggaaagcggacagcattctatactaaagaagttggtaaa
gttgatatccatcctgcatcagtcaatgctggggttcatttattccctctcccttacatg
gtttatagtgaaaaagtgaagacaaccagcatttacatccgagactctacgaatttatca
gattatgctctacttctatttggtggtagtcttatccctagcaagaccggggagggcatt
gagatgcttggaggttaccttcatttctccgcatcaaagagtgttctagaattgattcgg
aaactgcgtggtgaactcgacaagcttttgaacagcaagattgacaacccaggactggac
atctccagcgagggaaaggcagttgtgtctgctgtggtagagttgctgcatagtcagaat
atacaatattga
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