Pyrus x bretschneideri (Chinese white pear): 103935427
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Entry
103935427 CDS
T03446
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103935427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103935427
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
103935427
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
103935427
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
103935427
NCBI-ProteinID:
XP_009343467
LinkDB
All DBs
Position
Unknown
AA seq
287 aa
AA seq
DB search
MVGLSIGEKHFIQGGIAQDIRSDGRKRLTPRPINVKTGVISQANGSARVRMGATDVIASV
KAELGRPTALQPDKGKVFINVDCSPTAAPMFEGRGGEELSAELSVALRHCLLGGKSGSGA
GIEVSSLVVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVNVAAGASGD
EQPEVDVSDEEFLQFDTSKVPVIVTLTKVGKHYIVDATSEEESQMSSAVSISVNRQGHIC
GLTKRGGAGLDPSIILDMVSVAKTVSEQLINTLDSQIAAAEAGEDES
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggtgggactatccataggagaaaagcattttatacaggggggcattgctcaggacatt
cgttctgatggtcgaaaaagattgacgcctcggcccatcaatgtcaaaactggagtcatt
tcccaggcaaatggttcggcaagggtcaggatgggggctacggatgtcattgctagtgtg
aaggctgaacttggaaggccaactgcactgcaacctgacaaaggaaaggtctttataaat
gttgattgcagtccaaccgcagcaccaatgtttgagggtagagggggtgaggagctgtca
gcagaactctcggtggctcttcgacattgcctcttgggtggtaaaagtggatctggtgct
ggaattgaagtctcctctctggtagttgtggaaggaaagatctgttgggatctttacatt
gacggccttgttgtcagttcagatgggaatcttctagatgccctaggtgctgctataaag
gctgctttgagcaatacaggcatcccaagagtaaatgttgcagctggtgcatcaggggat
gagcaaccggaggttgatgtaagcgacgaggagtttctgcaatttgacacatctaaggtt
cctgtcatagttacattaacaaaggtaggtaagcactacattgtggatgccacttcagaa
gaggaatcacaaatgagctcggctgtttcaatttctgtcaataggcaagggcacatctgc
gggttgaccaaacggggtggtgcaggcctagatccaagcatcattctcgacatggtatcc
gtggcaaaaacagttagtgagcagctgataaacacgttggattctcagatagctgctgct
gaagctggtgaagatgaatcgtaa
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