Pyrus x bretschneideri (Chinese white pear): 103938503
Help
Entry
103938503 CDS
T03446
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
103938503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pxb03400
]
103938503
DNA repair and recombination proteins [BR:
pxb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
103938503
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
103938503
NCBI-ProteinID:
XP_009346787
LinkDB
All DBs
Position
Unknown
AA seq
942 aa
AA seq
DB search
MDANFEDHSKLPELKLDAKQSQGFLSFFKTLPNDSRAIRLFDRRDYYTAHGENATLIAKT
YYRTTTALRQLGSGSNGLSSVSVSKNMFETITRDILLERTDHTLEIYEGSGSSWRLVKSG
TPGNLGSFEDVLFANNEMQDTPVVVALLPNFRENGCTVGLGYVDLTKRVLGLAEFIDDSH
FTNVESALVALGCKECLLPLESGKTSESRTLHDALGRCGVMLTERKKTEFKMRDLVQDLS
RLVKGSIEPVRDFVSGFEFAPGALGALLSYAELLADESNYGNYSIQRYNLDSYMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINSRLDLVQAF
VEDPALRQDLRQHLKRISDIERLMHNLEKKRAGLQHIVKLYQSCIRLPYIKSALECYDGQ
LSSLTKERYWEPLELWTDDRHLNKFIALVEAAVDLDQLENGEYMISSSYDPALSALKEEQ
ESLEHQIQNLHKQTANDLDLALDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLE
TRKDGVKFTNTKLKKLGDQYQRIVEEYKSCQKELVNRVVQTTTTFSEVFWSVAGLLSELD
VLLSFADLASSCPTPYTRPVITPPDEGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDSASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATH
FHELTALAHENVVEDTNMKQIVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIQVA
EFANFPESVVSLAREKAAELEDFSATTVTPNDATEEVGLKRKREHDSGDMSKGAARAHKF
LEEFSNLPLETMDLQQALQKVSKMKDELQKDAANSQWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggatgccaattttgaggaccacagcaagcttcccgagctcaagctagatgcaaagcaa
tctcaagggtttctctcattcttcaaaaccctccccaatgattcaagagctattcgattg
tttgatcgtcgggactactatactgctcatggtgaaaatgccactctcatcgcaaagacc
tactaccgtaccaccactgctttacggcagttgggtagcggatctaatggcctatccagt
gtgagtgttagtaaaaatatgtttgagacaattacacgtgatatactactggaaagaaca
gaccacactcttgagatttacgagggtagtggctcaagttggaggctggtgaaaagtgga
acgcctggaaaccttggcagttttgaagatgttttgtttgccaacaatgagatgcaggat
accccagtggttgttgcgctattacctaactttcgggaaaatggttgcacagttgggtta
ggatatgttgatctaactaaacgagtacttggattagctgaatttattgatgatagtcac
tttacaaatgtggaatcagctttagttgcacttggttgcaaggaatgccttctgcctcta
gagagtggcaaaactagcgaaagtagaacattgcatgatgcactgggtagatgtggtgtg
atgttaactgagaggaagaagactgaatttaagatgagggatttggttcaggatcttagt
cggcttgtcaaaggctccattgaaccagttcgagattttgtgtcagggtttgagtttgca
cctggtgcattgggggcattgctctcttatgcagaattacttgctgatgagagcaattat
ggaaattatagcattcaaagatataatcttgatagctatatgaggttagattctgctgct
atgagggcacttaatgtcctggaaagcaaaaccgatgcaaacaaaaatttcagtttgttt
ggtcttatgaataggacttgtactgctggaatgggtaaaagattactgcacatgtggcta
aaacagcctttattggatgtaaatgaaatcaactcgaggctagatttggtacaagcattt
gtggaggatcctgcacttcgccaagatttgaggcagcatctgaaaagaatttcagacatc
gagcggctgatgcacaatcttgagaagaaaagagctggtttgcagcatattgtgaaactt
tatcagtcatgtataagacttccctacattaagagtgccctagaatgctatgatggacag
ttgtcttcactgaccaaggaaaggtattgggaaccccttgagttatggactgatgatcgc
cacttaaataagttcattgctctggtggaagctgctgttgaccttgatcaacttgagaat
ggagagtacatgatatcatctagttatgacccagcactgtctgcactgaaggaagagcaa
gagtcgttggagcaccaaatacagaatttgcacaaacaaactgccaatgatctcgatctc
gccttagataaggctttaaaattagataaaggtacacaatttgggcatgttttcagaatc
acaaagaaggaagagccaaaaatacggaagaagctcacaacacaattcattgtcctggaa
acccgaaaggatggagtgaaatttaccaacacaaagcttaaaaagttaggggatcagtat
caaagaatagttgaagagtataagagttgccagaaagagcttgttaaccgagttgttcaa
actacaacaactttctctgaggtgttctggtctgtagctgggttgctctctgaattggat
gtcttacttagttttgctgatttggcttctagttgtcctactccttacactaggccagtc
atcacgccaccggatgaaggggatattatattagaaggcagtagacatccctgtgtggag
gcgcaggactgggtgaattttatacccaacgattgtaaacttgtgagaggaaagagttgg
ttccaaatcatcacaggtcccaatatgggtggtaaatcaacatttatccgacaggttggt
gtgaatattttgatggcacaagttggttgtttcgttccttgtgactcagctagcatttct
gttcgtgattgcatttttgctcgggtgggagctggtgactgccaactacgtggagtttct
acctttatgcaagaaatgcttgagactgcatctatactgaaaggagctacagacaagtca
ctaataattattgacgagttaggccgggggacttcaacttatgatggattcggtttagct
tgggccatttgtgagcaccttgttgaagtgattaaagcacctaccttattcgcaacccac
tttcatgaattaactgcattagctcatgaaaatgtcgttgaggacactaatatgaagcaa
atagttggcgtagcaaactatcatgttagtgcacatattgactcatcaagccgcaagttg
actatgctgtacaaggttgagccaggggcttgtgatcaaagtttcggtattcaagttgca
gagtttgcaaactttcctgaaagtgttgtttcccttgctcgagaaaaagctgctgaactg
gaggatttctctgctactacagtcacgccaaatgatgctacagaagaggttggtttgaag
cgtaagagagagcacgactctggtgatatgtctaaaggagctgctcgggcgcacaagttt
ctggaggagttttctaatctgccattggagacgatggatttacagcaggctctgcaaaaa
gttagcaagatgaaggatgagttgcagaaggatgcagctaattcccaatggctccagcag
tttttctag
DBGET
integrated database retrieval system
