Pyrus x bretschneideri (Chinese white pear): 103938672
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Entry
103938672 CDS
T03446
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103938672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pxb03041
]
103938672
Spliceosome [BR:
pxb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
103938672
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_Aladin
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_EIPR1
PRP4
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_WDR41
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_IFT140_1st
WD40_like
Beta-prop_Nup120_160
Tricorn_2nd
Beta-prop_NUP159_NUP214
Beta-prop_SPT8
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
103938672
NCBI-ProteinID:
XP_009346978
LinkDB
All DBs
Position
Unknown
AA seq
542 aa
AA seq
DB search
MEEEKPLSTLPEPSVAAVPIAPVRAPPLRPPPPINGEARTSTSDSDDSDSEEPPRATGVS
GGEYEIXXXXXXXXERQEKAMQELLMKRRASALAVPTNDMAVRARLRRLGEPITLFGERE
MERRDRLRMIMARLDSQGELEKLLKVHEEEEAAASAAAVEDGDDQIIQYPFYTEGSKALL
NARIDIAKYSIRRAATRLERARRKKDDPDEDMDAELDLVLEQAKSLELDCSEIGDDRPLS
SCSFSHDGQLLATCAISGVAKLWSMPEAKKVATLKGHTERLTDVQFSPVHNLLATASADR
TARLWNTEGTQLLTFKGHLDRLARIAFHPSGKYLGTTSFDQTWRLWDVETGEELLLQEGH
SRSVYGIDFHPDGSLVASSGLDALTRVWDLRTGRSILALEGHVKKVLALSFSANGYYLAT
GGEDNTCRIWDLRKKKSIYTIPAHSNLISQVKFEPQEGYFLVTASYDLTAKIWSARDFKP
VKTLSGHEAKVTSLDISGDGQQIATVSHDRTIKLWSSRTNKKDQAMDVDYSTNEKDQAMD
AD
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggagaaacctctatcaactttaccggagccatctgttgcagcagtcccaatt
gctccagtccgcgctcctcccctcagaccgccgccgccaataaatggggaagccaggacg
agcacaagtgactccgatgattccgactcggaggagcctccaagagctaccggcgtttcg
ggtggggagtacgagatannnnnnnnnnnnnnnnnnnnnngagagcggcaggagaaagca
atgcaggaactgctgatgaagcgccgtgcttctgctcttgctgttcccaccaacgacatg
gccgtgagggctcgtcttcggcggctcggcgaacccattactctctttggggaaagagag
atggaaaggcgagacaggttgaggatgatcatggcgaggctggattcgcaaggggagttg
gagaagttgttgaaagttcatgaggaggaggaggctgcagcttctgctgctgcagtggag
gatggtgatgatcaaattattcagtaccctttttacactgaagggtccaaagctttgttg
aatgctaggattgacattgccaagtattccattaggagggcggccacgcggcttgaacgg
gctcgaagaaagaaggatgacccagatgaggatatggatgcagagttggacttggttttg
gagcaggcaaaaagtttggaacttgattgcagtgagattggggatgataggccactttcg
agttgttctttctcacatgatgggcaactgcttgccacttgtgctataagtggagtggcc
aagttgtggagcatgcctgaagcaaagaaggttgccactttaaagggacacacagagcga
ctgactgatgttcagttttctcctgtgcataacctcttagcaactgcatctgctgaccgg
actgcaaggttgtggaacacagaaggaactcagctgttgacatttaagggccatttggac
cgtctggcacgaattgccttccatccatcaggtaagtacttgggtacgactagttttgac
cagacatggaggttatgggacgtagaaactggtgaagagttacttctacaagaaggtcac
agtaggagtgtctatgggatagacttccatcctgatggatcattggtggcatcctctgga
ctggatgcacttactcgtgtttgggacctccgtactggaagaagtattcttgccttggaa
ggccatgtcaagaaagttcttgcgctcagtttctcagcaaatggctattatttagccact
gggggtgaagacaacacttgcagaatatgggatttaagaaaaaagaaatccatatacacc
attccagcgcattccaatctcatatcacaggtcaaatttgagcctcaagaaggatatttc
cttgtaactgcttcatatgatttgacagcaaagatatggtcagcccgagattttaagcct
gtcaagacgctctctggacatgaagcaaaagttacatctttggatatttcaggagatggg
caacagattgctaccgtatcacatgaccgaaccatcaaactgtggtccagccgtaccaac
aagaaggatcaagcaatggatgtggattacagtaccaatgagaaggatcaggcaatggat
gcggattag
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integrated database retrieval system
