Pyrus x bretschneideri (Chinese white pear): 103938727
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Entry
103938727 CDS
T03446
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pxb03041
]
103938727
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103938727
Spliceosome [BR:
pxb03041
]
Complex C
Other components
Complex C specific factors
103938727
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
HA2_N
DEAD
AAA_19
AAA_30
AAA_7
T2SSE
ResIII
AAA_16
Motif
Other DBs
NCBI-GeneID:
103938727
NCBI-ProteinID:
XP_009347075
LinkDB
All DBs
Position
Unknown
AA seq
690 aa
AA seq
DB search
MSQFWKPGTEKPRLVDDEEGGVLFFNSPSGYANIERQRQRLPVFRYRTAILYLVETHATT
IVVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVAARVAEEMGVKLGDEVG
YTIRFEDVTTQGVTMIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIATDILLGLLK
KIQRRRPELRLIISSATIQAKSMSEFFQPRKSRRRPDGEDLGPNMEPAVLSVEGRGFSVQ
IHYVEEPVSDYLRATVSTVLLIHDQEPMGDILVFLTGQDDIDAAVQLITEEAQNRGKNSS
GLMLVPLYSGLPRAEQELVFTPTPRAKRKVVISTNIAETSITLEGVVYVVDSGFSKQRFY
NPITDIENLVVAPISKASARQRTGRAGRVRPGKCYRLYTEEYFAKEMSDEGIPEIQRSNL
VSCVIQLKALGIDNILGFDWPASPSSEAMVRALEVLYSLGVLDDDAKLTSPTGFQIAEFP
LEPMIAKMILSSCELGCSEEIITIAAVLSIQTIWVSGRGSQKELDEAKLNFAAAEGDHVS
FLNVYKGFLQSGKSPQWCHKNFVNYQAMKKVIEIRGQLRRTAQRLGVVLKSCERDTVVVR
KAITSGFFANACRLDASSHDGKYKTIRGSQEVYIHPSSVLFRVNPKWVLYHSLVSTDKQY
MRNVISIDPSWLTEAAPHFYQHQRLNSMVH
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagttctggaaaccagggaccgagaagccccgcctcgtcgacgacgaagagggc
ggtgtccttttcttcaattccccttctgggtacgcgaacattgagcggcagaggcaaagg
ctgcccgtgttccggtaccgcaccgccattctttacctggtggagactcacgccactacc
atcgtagtcggcgaaacgggcagcggcaaaaccacccaaattcctcagtacctcaaagaa
gccggttgggctgacggagggcgggttatagcgtgcacccagccaaggaggctggctgtc
caggcagttgctgcaagggtcgcggaagaaatgggggtcaagcttggggatgaagttggc
tacactataagatttgaagatgttacaacacagggtgtaactatgataaagtttttgact
gatggtgtgctactcagggaaatgatggatgatcctcttttgactaaatatagcgtcata
atggttgatgaggctcatgaaaggtctatcgcaactgacattttattgggtctcctgaaa
aagatccaacgacgccgacctgagctgcgtctgattatctcatctgccacaattcaagca
aagtcgatgtctgaattctttcagcccagaaaaagtcgtcgcagaccagacggagaggat
cttggaccaaatatggagcctgcagtcctatcagttgagggtagagggtttagtgtacaa
attcattatgtggaggagcctgtatctgactatcttcgggctactgtgtcaactgtatta
ttgatccatgaccaggaaccaatgggagatattctggtttttcttactggtcaagatgat
attgatgctgctgtacagctgattactgaagaagctcaaaaccgcggaaagaactcatca
ggattgatgcttgtgccgctctactcaggacttccacgtgctgagcaggagctggtgttc
actcctactcccagagcgaagaggaaagtagtgatatcaaccaatatagcagagacgtca
ataactttggagggcgttgtctatgttgttgacagtgggttctcgaagcagcgtttctac
aacccgataacagatattgaaaatctggtagtggcaccaatatccaaggcatctgctaga
caaagaactggtagggctggaagagttcggcctgggaaatgttacaggctatatacggaa
gagtattttgcaaaggaaatgtctgatgaggggattccagagatacagaggtcaaatctt
gtgtcctgtgtgattcagttaaaagccttgggaatagataatatcctgggttttgattgg
ccagcatctccttcttccgaagcaatggttcgggcgcttgaagtgctttattcacttgga
gtcctagatgatgatgcaaaacttacttcgccaactggatttcaaattgctgagtttcca
ttggaaccaatgattgcaaaaatgatattatcttcatgtgaactggggtgttcagaagag
ataattaccattgctgccgttctctccattcaaactatctgggtttcgggtaggggatcg
cagaaggaactggatgaagccaagttgaattttgcggctgctgagggcgaccacgtgagt
ttcctaaatgtctacaaaggatttcttcagtctggtaaatcgccgcagtggtgccataag
aactttgtaaactaccaagccatgaaaaaggttattgaaattagaggacaactcagaaga
acggctcagagattaggcgttgtcttgaaatcttgtgaaagagacacagtggtagtgagg
aaggccattactagtgggtttttcgctaatgcatgtcgattagatgcatcaagtcacgac
gggaagtacaagactattagaggttctcaagaagtttatattcacccatcatccgtgtta
ttcagagttaatcccaagtgggttctgtaccattctcttgtctcaaccgacaagcagtac
atgcggaatgtgatttcgatagatccttcttggctcacagaggcagctccacatttttac
cagcaccagcgactcaactcgatggttcactaa
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