Pyrus x bretschneideri (Chinese white pear): 103939295
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Entry
103939295 CDS
T03446
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103939295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103939295
03012 Translation factors [BR:
pxb03012
]
103939295
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103939295
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103939295
Translation factors [BR:
pxb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103939295
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
Dicer_dimer
AAA_16
ATPase
AAA_30
Motif
Other DBs
NCBI-GeneID:
103939295
NCBI-ProteinID:
XP_009347643
LinkDB
All DBs
Position
Unknown
AA seq
1214 aa
AA seq
DB search
MSLKHSTTTTTPFLFSVRGTHHRHRHHVALIRPSLLLGCSMRNSRYHHSLCLAPARNWNA
CYYLSRHVGDVTCQASSRAAELDWKQRQQLRSSAVPFYQQNLSYGRFAYQDASASEESDA
ELGSSQRQMGGSTLDNLDEWRWKLTMLLRNNDEQELVSREKKDRRDFDHLSALASRMGLY
SRQYSRVVVFSKVPQPNYRPDLDDKRPQREVVLPFGLHREVDAHLKAYLSQKPMSQGNLS
DFSLSRSNSSRSITNDGGHYEQQEPLIQNTDAMEKILQRKSLQLHNRQRHWQESPEGQKM
LELRKSLPAYKEKDALLKAVSENQVVVVSGETGCGKTTQLPQYILESEIEADRGASCSII
CTQPRRISAMAVSERVAAERGENLGESIGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDR
KLRGVTHVIVDEIHERGMNEDFLLIVLKELLPHRPELRLILMSATLNAELFSSYFGRAPT
IHIPGFTYPVRTHFLENILEMTGYRLNQYNQIDDYGHEKSWKMQKQAQGFKKRKSQIASA
VEDVLEVADFGEYSPRTQESLSCWNPDSIGFNLIESLLLHIVRKERPGAILVFMTGWDDI
NSLKDQLQAHPLLGDPSRVLLLACHGSMPSSEQKLIFDKPEDGVRKIVLATNMAETSITI
NDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAASRQRRGRAGRVQPGECYHLYPRCVY
DAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSKALQPPEPLSVQNAVEYLKIIGAL
DDNEDLTVLGRHLSVLPVEPKLGKMLILGSIFNCLDPVMTVVAGLSMRDPFLMPHDKKDL
AESAKAQFSAHDNSDHLALVRAYDGWRSAERTESGYEYCWRNFLSVQTLKAIDSLRKQFF
FLLKDAGLADHNTESCNTWSHDEHLVRAVICAGLFPGICSVVNKEKSIMLKTQEDGQVML
YSSSVNGSIPKIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNISMGGLNGHLKML
GGYLEFFMNPALADTYLCLKKELDELIHNKLLNPKLDMQSHTNLLSALRLLVSEDQCEGR
FVFGRKVPVPSKKATQEKLPKLKGSVKKVAENNNYKNHLQTLLTRAGHDVPTYKTKPLKN
NQFRSTVIFNGLNFVGKPCNSKKEAEKDAAAEAVLWLKGENHSSSTDIDHMSMLLKKSRK
TSQKRTSFDSAKWG
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcaaacactccaccaccaccaccaccccgtttcttttctctgtacgcggaact
caccaccgccaccgccaccacgtagctttgataaggccgtcgctgctattgggatgctcg
atgaggaacagccggtaccaccactcgctctgccttgctccggcccggaattggaatgcg
tgctattatctgtcgcgtcacgtgggggacgtcacgtgccaggcatcgtctcgggcggcg
gagctggattggaagcagaggcagcagctgaggagttcggcggtgccgttttaccagcag
aatttgagctatgggcggtttgcgtaccaggacgcctctgcgagtgaggagtccgatgcc
gaattggggtcgtctcagcgccaaatgggtggttcgacccttgataaccttgatgaatgg
agatggaagttaaccatgcttcttcgcaacaatgacgagcaagaattggtgtcaagggaa
aaaaaggatagacgcgattttgatcatctttcagcactggcaagcaggatgggtttgtat
agccgtcaatattctagagttgtagtatttagcaaagttcctcagcccaattacagacct
gatcttgatgataagcggccacaaagagaggttgtgttaccttttggacttcatagagaa
gtagatgctcatctcaaagcctacctatctcaaaagccaatgagccaaggaaatttgtca
gacttttccttgtcaagatcaaacagtagtagaagcattactaatgatggaggacattat
gagcagcaggagcccttgatacagaatactgatgccatggagaaaattcttcagcggaaa
agcttgcaactgcataataggcaacgacattggcaggaatcgccagaaggtcaaaagatg
cttgaacttcgtaaaagtctgcctgcatataaggagaaagatgcactgttaaaagctgta
tcagaaaatcaggtcgtagttgtctccggcgaaacaggttgtggtaaaactacacaactt
cctcagtacattttagaatctgagattgaagctgatcgcggagcttcctgcagtattatt
tgtacccagcctagacggatatctgccatggctgtttctgaaagagtagctgcggaacga
ggggagaatctgggggaatctattggttacaaagttaggcttgaagggatgaaagggcgg
gacacccggcttcttttttgcaccacgggcatattattaaggagattacttgttgacaga
aagttgagaggtgttacacacgtcattgttgacgagattcatgaacgcggaatgaatgaa
gattttcttcttattgttctgaaagaacttctccctcaccggccagagttgaggttgatt
ttgatgagtgccaccctaaatgctgagcttttctcctcctactttggtcgtgctccaacg
atccatattcccgggtttacttacccagtccgaacacattttctggagaacattctagaa
atgactgggtatcggttaaatcaatataatcagattgatgattatggtcatgaaaagtcg
tggaaaatgcagaaacaagctcaaggtttcaaaaagaggaagagccaaattgcttctgct
gttgaggatgtacttgaagttgccgactttggggagtacagtccaaggactcaggagtct
ctgtcctgttggaatcctgactctattggttttaacctcattgagagtcttcttttacac
atagtcaggaaagaacggcctggcgcaattttagtttttatgacgggttgggatgacata
aactccttgaaggatcaactccaagctcatcccctattaggagatcctagcagggtccta
ctgctggcatgtcatggttccatgcctagctctgagcagaaattgatatttgataagcca
gaagatggtgttcggaaaatagttctagctacaaacatggctgagactagtatcactatc
aatgatgtagtttttgttgttgattgtggaaaggcgaaagagacatcatatgatgcccta
aataacactccctgtttgcttccttcctggatttcaaaggctgcttctcggcaaagaaga
ggcagagctggtcgtgttcaacctggcgagtgttaccatctctaccccagatgtgtatat
gatgcctttgctgattatcagttgcctgaacttttgaggactccgttgcaatcattatgt
ttacaaatcaaaagtctacaacttggaagtatttcagagttcctatctaaggccttgcag
ccaccggaacctctgtcggttcaaaatgctgttgagtatttaaagatcattggggcgtta
gatgataatgaagacctgacagtgttaggacgtcacctgtcagtgcttcccgttgagcct
aagcttggaaaaatgctcatattggggtctattttcaactgtttggatccagtaatgact
gttgtcgcaggccttagtatgagagacccattccttatgccgcatgacaagaaggatctt
gcagagtccgcaaaagcacagttctctgctcatgataacagtgatcatcttgctcttgtc
cgagcttatgatggttggagaagtgctgaaagaacagagtctggctatgagtactgctgg
agaaactttctttctgtacaaactctgaaagccattgactctcttcggaagcagttcttc
tttttgctcaaggatgcaggtctggctgaccataatacagaaagctgcaatacatggagc
catgatgagcatcttgtccgagcagtcatctgtgctggattatttcctggaatatgctct
gtcgtgaacaaagagaagtcgattatgcttaaaacacaggaagatggacaagtgatgcta
tactcgagttctgtcaacggaagcatacccaaaattccatatccatggctagtcttcaac
gaaaaggtgaaagtgaattcggtttttctccgggattcaactggtatatctgattctgtg
ctccttttgttcgggggcaacatttccatgggtggcctgaatgggcacttgaagatgctg
ggaggatacttggagtttttcatgaatcccgcattagcagatacatatctttgcttaaag
aaggagcttgatgaactgattcataataagctcctgaatcccaagttggatatgcaatca
catacaaacctcctatcggctctaagattactggtctcagaggatcaatgtgagggtaga
tttgtatttggtcgcaaggtgccagtgccctcaaagaaggcaacacaagagaagttacca
aagttaaaaggcagcgtgaagaaagttgcagagaacaataattacaaaaatcacctgcaa
acattgctcaccagagccgggcatgatgtacccacctacaaaacaaaaccattgaaaaac
aatcagttccgttccacagtgatcttcaatgggttgaactttgtggggaagccttgcaat
agtaagaaagaagcagagaaagatgcagctgcagaagctgtactctggttgaagggagag
aaccattcttcgtccacagatattgaccatatgtcgatgcttcttaagaaaagtagaaag
acaagccagaaaaggacctcatttgatagtgccaagtggggttaa
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