Pyrus x bretschneideri (Chinese white pear): 103939626
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Entry
103939626 CDS
T03446
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103939626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pxb03041
]
103939626
Spliceosome [BR:
pxb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
103939626
Complex C
U5 SnRNP specific factors
103939626
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
103939626
NCBI-ProteinID:
XP_009348002
LinkDB
All DBs
Position
Unknown
AA seq
2347 aa
AA seq
DB search
MWNNGQIAPPGTGGSSIPPPPAAQPSYTVLPSPADAEAKLEEKARKWQQLNSKRYSDKRK
FGFVESQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFVPHAVYKLLENMPMPW
EQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFD
DEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLS
LPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDE
DWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMVMYIKTEDPDLPAFY
YDPLIHPIPSTNKERREKKTSDEEEDDIFTLPDAVEPFLKDTQLYTDTTAAGISLLFAPH
PFNMRSGRTRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKK
KHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT
LTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLT
GMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLE
RWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTI
LQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDK
TVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFTPIPFPP
LSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQR
AFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPP
LLVYKWCQGINNLQSIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYV
TAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPN
EFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYN
NKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSM
SGFEVRIHPKIRMSQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQIL
MSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMP
SRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNL
YRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGLPRINTLFQKDRH
TLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHT
LFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVY
VGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIET
VQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAEPKDVFDQKASNKYWIDVQLRW
GDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIALDLAYNLHSAFGNWFPGSKPLLQQ
AMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRV
TIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAAL
VRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILK
ATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTVVTEPHHIW
PSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAE
IEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQSAFGSKTDWRVRAISATNLYLRVN
HIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCIAMP
PQWGTHQQVHLPSALPDHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHAKILENTKQWDG
EKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFL
GFYMIPDTGPWNYNFMGVKHTPSMKYGIKLGTPREYYHEDHRPTHYLEFSNLEEGDTVEG
DRDDTFT
NT seq
7044 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacggccagattgcgccgcctggcaccggtggttcgtcgattccgccaccg
ccggctgctcagccatcttacacggtattgccttctccagctgatgccgaggcgaagctt
gaggagaaggcccggaaatggcagcaactaaattccaagcggtatagcgataagcgcaag
ttcgggttcgtcgagtcgcagaaggaggatatgcctcctgaacatgtcaggaagatcatt
agagaccatggggacatgtcctcaaagaaatttcgtcatgataaacgagtgtatcttgga
gcgcttaagtttgtcccccatgcagtttacaagctcctcgagaatatgccaatgccatgg
gagcaggtccgggatgtgaaggttttgtaccatataactggggcaattacatttgtaaat
gaaataccatgggttgttgaacccatctatttggctcagtggggtacgatgtggattatg
atgagaagggagaagagggatcgtcggcatttcaaaagaatgcggtttccaccatttgat
gacgaggaacctccattagactatgctgataatctgttagatgttgatcctctagagcca
attcaattggagttggatgaagaagaagattctgctgtgtatacatggttttatgaccat
aaacctcttgtcaaaacaaagctcattaacggtccaagttataggaagtggcatctgtcg
cttccgatcatggcaactcttcatcgactagcaggacagctgctttctgatcttattgac
cgcaattatttctacctgtttgacatggagtctttttttacagccaaagcactcaacatg
tgcattccaggtggacctaaatttgaaccgttgtatcgggatatggagaaaggggatgag
gactggaatgaatttaatgacatcaacaaactcattattcggtcacctcttagaacagag
tacagaattgcattccctcatctctacaacaatagaccaaggaaggtcaagctctgtgtt
tatcacacacccatggtgatgtacataaagaccgaggatcctgatttacctgcgttttat
tatgatccattgatacacccaatacccagcactaacaaggagcggcgtgagaagaaaact
tctgatgaggaggaagatgatatctttacgttgccggatgctgtggaaccttttctgaaa
gatactcagctttatactgacacaacagctgccggaatctcccttttgtttgccccgcac
ccttttaacatgagatctggtcggacccgtcgtgcagaagatataccccttgtgtccgag
tggtataaggaacattgtcctccttcatatccagttaaagttcgagtcagctatcagaag
ttgctgaaatgttttgtattgaatgagctgcatcacagaccacccaaagctcaaaagaag
aaacatttgtttcgatctctccaagctaccaagtttttccaaactacagaacttgattgg
gccgaagcgggtcttcaagtctgtaagcagggttataacatgctgaatctcttgatccac
aggaaaaatttgaattaccttcaccttgattacaattttaatctgaagcctgtgaagacc
ctgacaacaaaggagcgtaagaaatctcggtttggtaatgcttttcatctgtgccgtgaa
atcttgcggttgacaaagcttgtagttgatgccaatatccaattccgtttgggtaatgtt
gatgcctttcaattggctgatggcttacaatacacgttttctcatgttggtcagttgact
ggaatgtaccgttacaagtacaggttgatgaggcagattagaatgtgcaaagatttgaag
cacttgatttactaccggttcaatactgggccagtgggaaaaggaccgggatgtgggttc
tgggcaccaatgtggagggtgtggttgtttttccttcgtggcatagttcctcttctggaa
cggtggctggggaatttactagcacgtcaatttgaggggcgccattcaaaaggagtggca
aagactgttactaagcagcgtgttgaaagccattttgacttggagcttcgagctgctgtg
atgcatgatgttcttgatgccatgcccgagggtatcaagcaaaataaggccagaactatc
ttgcaacatctcagtgaggcatggcgttgctggaaagcaaacattccttggaaggttcct
ggtttgccagttcccattgaaaatatgattcttcgttatgtcaaatcaaaggcagactgg
tggacaaatgttgctcattataatcgtgaacgtataagaagaggtgctactgttgataag
acagtttgtcgaaagaatcttggaagattaactcgtctctggctaaaggcggagcaggaa
cgacaacacaattatttgaaagatggtccatatgtcacaccagaagaggcagttgcaatt
tacacgacaactgtgcactggttggagtcgaggaagtttacacccattccgttccctcca
ttgtcgtacaagcatgataccaagcttctgatccttgctctggagaggttgaaggagtct
tatagtgtggctgtaagattgaaccaacttcaaagagaagagctgggtctcattgaacaa
gcctatgataatcctcatgaggcattgtcacgaattaagcgtcacttgcttactcagcgt
gcattcaaagaagttggcatagagttcatggacttgtatagctatctgattccagtttat
gagatagaacctcttgagaagattacagatgcatatcttgatcaatatttatggtatgag
ggtgacaaacgtcatctctttcccaactggatcaagcctgcagattcagagccacctcca
ctcttggtttataagtggtgtcagggaatcaataatttgcagagcatatgggatacaagt
gaggggcaatgtgtggtgatgcttcaaacaaagtttgagaagttctttgagaagatcgac
ttgacaatgctaaataggctcctgcggcttgttcttgaccataatattgctgattatgtc
actgcaaagaacaatgtggtgttgtcctacaaagatatgagtcatacaaattcgtatggt
ctcatacgtggtcttcagtttgcatcttttgtagtacaatattatgggcttgtgttggat
ctgttacttcttgggctgactcgggccagtgagattgctggtccaccccagatgccaaat
gagttcatcacttattgggatacaaaggttgagactcggcatcctatcaggctgtattct
agatacatagacagggtgcatatcttgttccgcttcacccacgaggaggctagggacctt
attcagcgatatcttactgagcatccggaccccaataatgaaaatatggttggatacaat
aataagaaatgctggccaagagatgctagaatgaggcttatgaaacatgatgtcaatctt
gggaggagtgttttttgggatatgaagaaccgtctccctcgaagcatcacaactttggag
tgggagaacagctttgtgtctgtttacagcaaggataatccaaatttgcttttcagtatg
tctggatttgaagttcggatacatccgaagataagaatgagtcaagaagcatttagtaac
acgagggatggggtttggaatttgcagaatgagcagacaaaggagaggactgcagttgct
ttcttacgtgttgatgatgaacacatgaaggtgtttgagaatcgtgtgaggcagattctt
atgtcttcagggtctacaacgtttacaaaaatcgttaacaaatggaatacagcgcttatt
ggtctaatgacttacttccgtgaagcaactgttcatacacaagaactgttggatttgctc
gtcaaatgtgaaaacaaaattcagacccgtattaagattgggttgaattcaaagatgcct
agcaggtttccacctgtcatattttacacgccaaaagaaattggaggacttggcatgtta
tctatgggtcacatattgattccacaaagtgacctccgttacagtcagcagacagatgtt
ggtgtgactcattttaggagtggaatgagtcatgaagaggaccagctgatcccaaatctt
taccgttacatacagccatgggagagtgaatttatagattctcaacgtgtttgggcagaa
tatgcactgaaaaggcaggaagctcaggcacaaaataggcgtctgactcttgaagatttg
gaagattcatgggataggggattaccacgcataaatactttgttccagaaggaccggcat
actttagcatatgacaaaggatggagagttcggacagattttaagcagtaccaggtgttg
aaacaaaatcctttctggtggacacaccagaggcatgatggaaagttatggaacttaaac
aactaccgaactgatgtgattcaagcccttggaggtgttgaaggaatccttgagcataca
ttattcaaaggaacatactttcctacatgggaggggctcttctgggagaaagcatctggt
tttgaggagtcgatgaagtataaaaagttgaccaatgcacagagatctgggctcaatcaa
atccctaatcgtagatttactctttggtggtcacctaccataaatcgggccaacgtatat
gttggtttccaagtgcagctagatttaactggaatatttatgcacgggaagattccaacc
ttgaagatatcactgattcagatattccgtgctcacttgtggcagaagattcatgaaagt
gttgtcatggatctctgtcaggttttggatcaagagttggatgctttggaaattgaaact
gtgcagaaagaaacgatacatcccaggaagagttacaaaatgaacagctcttgtgctgac
attcttctgtttgctgcccatcgatggccaatgtcaaaacctagtcttgtagctgagccc
aaggatgtctttgaccagaaagcgagcaataagtactggatagatgtacaactgcgttgg
ggagattatgattctcacgatattgagcgttacacccgagcgaagtttatggactatacc
actgacaacatgtccatctatccttctcccacaggggtgatgattgctcttgatttggcc
tataatttgcattctgcatttggtaactggtttcctggttcaaaacccctgcttcaacag
gcaatgaacaagatcatgaaatcaaatccagccttatatgtcctgagggagcgaataagg
aaaggattgcagctatattcttctgagcctacagagccatatttatcatcccaaaactat
ggggagatcttcagcaatcaaattatttggtttgttgatgacaccaatgtgtatcgtgtt
acaatccataagacatttgaaggaaatctcactacaaaaccaatcaatggtgctatcttc
atattcaatccaaggacggggcagttattcctgaaggttatccacactagtgtctgggca
ggacagaagcgtcttggtcagttggcaaagtggaaaactgcagaagaagttgctgcactt
gtgcgttctttgccagtggaagaacagccaaagcaaattattgtgactcgtaagggaatg
ttggatcccttagaggttcatttgctcgatttccccaacatagtcataaaaggaagtgag
ctgcagcttccttttcaagcttgtttgaagattgagaagtttggtgatctgatattgaag
gctactgaaccacagatggttcttttcaatatttatgatgattggttgaagagtatttca
tcatacactgcattctctcggctaattttgattcttcgtgctcttcatgtgaacaatgag
aaggcaaagatgttattgaagcctgataaaacagtcgttaccgagccacatcacatctgg
ccttctctttctgatgatcaatggatgaaggttgaggttgctcttagggatctcatattg
tcagactacgcaaaaaagaacaacgtgaatacatcagccctaacacaatctgagatccgt
gacattatacttggagctgagatcaccccaccttcgcaacagaggcagcaaattgcggaa
atagaaaaacaggccaaagaagccagccagctgacagcagtcacaacaaggactacaaat
gtgcatggtgatgaactcattgtcaccactacgagtccctatgagcaaagtgcatttggc
tctaaaactgattggcgtgtgagagcaatatcagctacaaatctatatctccgtgtcaat
catatatatgtgaattcagaagatattaaggaaacgggttacacctatattatgccaaag
aacattttaaaaaagttcatctgcattgcggatctgaggacgcaaatagctggttacttg
tatggcataagcccacccgataaccctcaggtcaaggaaatccgctgcattgcaatgcca
ccacaatggggtacccaccagcaagttcatcttccatcagctcttcctgatcatgatttc
ctcaacgatttggagcctctgggatggatgcacacacagccgaatgaacttcctcagctt
tctcctcaggatctcacttctcatgccaagattttagagaacaccaagcaatgggatggg
gagaaatgcatcattttaacctgcagtttcactccaggttcctgctccttaactgcgtac
aagcttactccatctggttatgaatggggacgtgtcaataaagacacaggaagcaatcct
cacggataccttcccactcattacgagaaggtgcagatgcttctcagtgaccgcttcctt
ggtttctatatgattccggacactggtccatggaactacaacttcatgggggtgaagcat
acgccgagcatgaagtacggcatcaagcttggaacacccagggagtactatcatgaggac
caccggccgacccattaccttgagttcagcaacctggaggagggtgatacagtggaagga
gatcgcgatgatactttcacataa
DBGET
integrated database retrieval system
