Pyrus x bretschneideri (Chinese white pear): 103939679
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Entry
103939679 CDS
T03446
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103939679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103939679
Enzymes [BR:
pxb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103939679
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103939679
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
PHD_ash2p_like
Motif
Other DBs
NCBI-GeneID:
103939679
NCBI-ProteinID:
XP_009348064
LinkDB
All DBs
Position
Unknown
AA seq
729 aa
AA seq
DB search
MNTHRPARALSRAISRAISHSCFSSSSSSSSSLKQQSSTFPLKNVTKSNFEPALADLRRH
VAAADFVAIDLEMTGITSSPWRDSLEFDRADVCYLKVKDSAEKFAVLQFGVCPFRWDSSK
RSFIAHPHNFYIFPRQELPLAGPPYEFLCQTTSIDFLAKYQFDFNVCIHEGISYLSREQE
SEALRRLSLAYDDELLARCSNLKEPMHMPVVKMADTLFAERMKNSFTEWRDGLLRSSKGG
FQFQGDSNDSQQLQTIFFKLRPALSLRGFTSHQLKLIQMVITRHFQDLFYVRINGEKSCQ
QQLVVRTESKDDRELLLNEVKDEHRREAEVKVQAAVGFRHVIDLLSSEQKLIVGHNCFLD
IAHVYSKFLGPLPSTAEEFVSTVNKYFPHVIDTKVLLNTDTVLQQRIKKSRTSLSSAFAL
LCPQIALGKKSTDSEVQMCVKVEVQVDDLRSSNWNSGAKHEAGYDAFMTGCVFAQTCSHL
GIDFQACSSSEKLAHNEKLQKQINHLYLSWSNGDIIDLTTGKKNAMSSGSNNHKKRYSQI
MSENVALIWGFPSKLKARDIRECISKVFGSTSVTSVFHLDETAVFVQFSKEKFVSEFLAL
KETLERSDGPVSVLHPLAGLLEGGSTRAANYETYKEICSSPSAKGFFADQAEAVGIKWKT
KLVESKEASETLKRESFDENSEVNPASKTENLRRSTTDTAENDPFCGRRAQYKIIDTLIA
SEGDQMRTN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgaacactcaccgcccggcgagggcgctgtcacgtgctatatcacgagccatatcccac
tcctgcttctcctcctcctcctcctcctcgtcgtcattaaaacagcaatcctcgaccttt
cctctgaaaaacgtgaccaaatcgaacttcgagccggctctggccgacctgcgccgtcat
gtcgccgccgcagacttcgtggccatagatctcgagatgactggaatcaccagctcgccg
tggcgcgactctctggagttcgaccgcgccgacgtttgctaccttaaggtcaaggactcg
gccgagaagttcgccgtgcttcagtttggcgtttgccccttccgatgggactcctccaag
cgctccttcattgctcatccgcacaatttctacatttttccgcgtcaagaacttccactt
gcaggcccaccatatgagtttctatgccagactacatcgatcgatttcttagctaaatac
cagtttgattttaatgtctgcatacatgaaggaatatcttatttatccagagagcaggaa
agtgaggcactgagacgtttgagtttggcatatgatgatgagttattggctagatgttca
aacttgaaggaaccaatgcacatgccagtggtcaagatggctgacactctcttcgctgaa
cggatgaagaactcattcactgaatggcgtgatggtttgttaagaagtagtaagggagga
ttccagtttcagggagactcaaatgactcccaacagttacaaaccattttcttcaagttg
cgtccagctcttagtctgaggggattcacttctcatcagcttaagttgattcaaatggtc
attacaaggcatttccaagatctcttttatgttcggataaatggtgaaaagtcctgtcaa
cagcaactagttgtgcggacagagtccaaggatgacagagagttacttctgaacgaggtg
aaggatgaacatcgtagggaagcagaggtgaaagttcaagctgcagttgggtttcgtcat
gttattgaccttctttcctcagaacaaaagttgattgttggtcacaattgctttcttgat
attgcccatgtatatagcaaattccttggccctcttccttcgactgctgaagaatttgtc
tctactgttaacaagtactttccacacgtcattgacaccaaagtactattaaacacggat
actgtgctccaacaacggatcaagaaatcccgaacatcactttcgtcagcatttgccttg
ttatgcccacaaattgctcttgggaagaaaagcactgattcggaagtccaaatgtgtgtg
aaagtggaagttcaggtggatgatttgaggtcctccaactggaattctggagccaaacat
gaagcgggatatgatgcttttatgacaggctgcgtctttgctcagacatgcagtcatctc
ggaattgattttcaggcctgttcgtcatctgaaaagttggcccacaatgagaagctccag
aagcagatcaaccatctatacctcagttggagtaatggagacattattgatttaaccact
ggtaagaagaatgcgatgtcttcggggtctaataaccacaaaaagaggtactcgcagatt
atgtctgagaacgttgctttaatctggggattcccatcaaaactcaaggcacgagacatc
agggagtgcatttcaaaagtctttggctcaacctctgttacgtctgtcttccacttggat
gaaactgcggtattcgttcagtttagcaaggaaaaatttgtctctgaatttctggctttg
aaggaaacattagagagaagtgatggtccagtctcagttttgcaccccctcgcgggactt
ttggagggtggaagcacccgagctgctaattatgaaacttacaaggaaatctgcagttca
cccagcgcaaaaggcttttttgcggatcaggctgaggcagttggtattaaatggaaaact
aaattggtagaatccaaggaagcatcagagaccctaaaacgggagagcttcgatgaaaat
agtgaagtgaatcctgcttcaaagaccgaaaatttgagaagaagtaccacagacaccgca
gaaaatgatccgttctgcgggcgtcgcgcacaatacaagatcatagataccttaattgct
tctgaaggcgatcaaatgagaactaattag
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