Pyrus x bretschneideri (Chinese white pear): 103939690
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Entry
103939690 CDS
T03446
Name
(RefSeq) general negative regulator of transcription subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103939690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103939690
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103939690
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103939690
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
103939690
NCBI-ProteinID:
XP_009348080
LinkDB
All DBs
Position
Unknown
AA seq
897 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWINNVVGELESQIDSFEAEIEGLSFKKGKGRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSEVDELYNTLPLDKVES
LEDLAIIPPGLIKGAPMLGLKINLAPPASPLPPAATSTNQQSVSVQEPVEDTVSQDSNAD
NVPRTPPPISGALSSSPASTPTGSHATPVSASVPTHNLPSVPSVLAIPGSNAVRGVTENA
GAANSSSPVSLSASVKEEESASFPGRRPSPSLSDAGLVRGISRGGFSAPIPSSIPVSSSN
VSPSNSALGAVPSVSDVTKRNILGADERIGNSGVVQPLVSPITNRLILPQAAKASDGSAP
VDSSNASEAAIPGRAFSPSIVSGMQWRPGSSFQNQNEAGIFRGRTEIAPDQREKFLQRLQ
QVQQQGHSTILGMPPLAGGNHKQFSAQQNPLLQQFNPQNSSVSSQAGPGLGVQPPGLGTV
APTTLQQQLNSIHQQSNQQALMSGGPKETDASHPKVEEQQQQQNIPDDSTADSTSSGLVK
NLMNEDDLKASYAIDSQAGVSGSSTEPAQVPRDIDLSPGQPLQSNQPSPSLGVIGRRSVS
DLGAIGDNLSGSTANSGVLHDRLYNLQMLEAAYYKLPQPKDSERARSYTPRHPAITPLSY
PQAQAPIVNNPAFWERLGLEPYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNT
WFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgagtcggaagctccagggcgagatcgaccgcgttctcaagaaggtccaagaa
ggcgtcgacgtcttcgatagcatttggaacaaggtttacgatacagacaatgcgaaccag
aaagagaagtttgaggccgacctcaagaaggagattaagaagctccagaggtacagggac
cagatcaagacttggattcaatccagtgaaatcaaggataaaaaggtcagtgcctcttat
gagcaggctctggtggatgctcgcaaactcattgagcgcgaaatggaaaggttcaagata
tgcgaaaaggagacaaaaacaaaagcattttctaaagaaggattgggccaacaacctaaa
accgatccgagggagaaggccaaatcagagacaagggattggataaacaacgtggttggg
gagttggaatctcagattgacagctttgaagctgagattgaagggctatctttcaagaaa
gggaagggcagaccacccagactaacccatctagagacatcaattactcggcataaggct
catataatgaagttagaactgatcttgaggctattggataatgatgagctgagtcctgag
caggtcaatgatgttaaagactttttggaagactatgtggaacgcaatcaggaggatttt
gatgaatttagtgaagttgatgagctttacaacaccttaccattggacaaggtggagtcc
cttgaagatctggccattattcctcctggtcttatcaagggtgcaccgatgcttggcttg
aagattaatttggcaccacccgcatctccactgcctcccgctgctacttctactaatcag
cagagtgtttctgtccaagagccagttgaagatacagtttcccaggacagtaatgctgat
aacgttcctagaactccacctcctataagtggtgcgctttcatcttctcctgcatcaaca
ccaactgggagtcatgcaactcctgtctctgcaagtgttccaactcataatctgcccagt
gtgcctagtgttttggccattccaggttcaaatgctgttcggggtgtcacagagaatgca
ggggctgctaattcttcatctcctgtaagtttgtctgcttctgtgaaggaagaagagtca
gcaagcttccctggccgtagaccatcaccatctctttctgatgctggacttgtaaggggc
atcagtcgaggtggcttctctgccccaattccatccagtatccctgttagctctagcaat
gtgtctcctagtaatagtgcccttggtgcagttccttcagtttctgacgtgaccaagaga
aatatattgggagctgatgagagaattgggaatagtggcgtggtgcagccacttgtttcc
cctataactaacagactgatcttgcctcaagctgccaaggctagtgatggaagtgctcca
gttgattctagtaatgctagtgaggctgctatacctggcagagcattttctccttctatt
gtctctggcatgcagtggaggcctggaagttcctttcaaaaccaaaatgaagcagggata
tttcgtggaaggactgaaatagcacccgatcagagggagaaatttttgcagcggctccaa
caagtgcagcaacaaggtcacagtaccattcttggcatgcctcctcttgctggtggaaat
cataagcaattttctgcacagcaaaacccacttttgcaacagtttaatcctcaaaactca
tctgtatcttctcaagctggccctggactaggagtacagcccccaggtcttggtactgtt
gcacctaccaccttacagcagcagctaaattctatccatcaacagtctaaccaacaggca
ttgatgtcgggtggaccaaaagaaactgatgcaagtcatccaaaagttgaggaacaacag
caacaacagaatatacctgatgattctactgcggactctactagttccggactcgtaaag
aatctaatgaatgaagatgacttgaaagcctcatatgcaattgattctcaggctggagtt
tctggctcttcaacagagcctgctcaagtaccacgagatattgatctctctcctgggcaa
cctttacagtccaatcaaccttctcctagccttggcgttattggccgaagaagtgtttct
gatcttggtgcaattggtgataacctttctggatcaactgctaattctggggtattgcat
gatcggttgtataatttgcagatgcttgaggctgcttactacaaacttccacaacccaaa
gactcagaacgtgcaaggagctatactccaaggcaccctgcaataacacctctaagctac
ccccaagcgcaggcacctattgttaataatcctgccttctgggaacggttaggtcttgaa
ccatatggcactgataccctgttctttgcattttactatcagcagaacacttatcagcaa
tatttggcggcaaaagaactgaagaagcaatcttggagataccataggaaatataatact
tggtttcaacggcacgaggagccaaaagttgccacagatgaatatgaacaggggacgtat
gtgtactttgactttcatattgcaaatgatgatctacaacacggatggtgccaaaggatc
aaaactgagttcacttttgaatataactatcttgaagatgagcttatcgtatag
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