Pyrus x bretschneideri (Chinese white pear): 103939959
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Entry
103939959 CDS
T03446
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03013
Nucleocytoplasmic transport
pxb03015
mRNA surveillance pathway
pxb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103939959
09122 Translation
03013 Nucleocytoplasmic transport
103939959
03015 mRNA surveillance pathway
103939959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103939959
03041 Spliceosome [BR:
pxb03041
]
103939959
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103939959
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103939959
Spliceosome [BR:
pxb03041
]
Complex C
Other components
EJC/TREX
103939959
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103939959
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
103939959
NCBI-ProteinID:
XP_009348326
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGEVRDNDGYEEELVDYEEEDQNAPNSVSAKPSGDTVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALI
LCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVSIKVHKDLLKNECPHIVVGTPGRVLA
LARDKELGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEPEKNRKLTDLLDALDFNQVVIFVKSVS
RAAELNKLLADCNFPSICIHSGMPQEERLKRYKNFKEGLSRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQSRFEVDIKELPEQI
DTSTYMQV
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtcagagacaacgatggttacgaagaggagctcgtcgactacgaagaggag
gaccaaaacgcccccaactccgtctctgccaagccttctggcgataccgtcaaaaaggga
tatgttggcatccatagttcgggattcagagacttccttttgaagccggagcttcttcga
gcaattgtggattctggattcgaacatccttcggaagttcaacatgagtgcatccctcaa
gctatcttaggaatggatgttatttgtcaagcaaaatctgggatgggaaaaactgccgtc
tttgttctgtcaacccttcagcaaatagatccagtagctggtcaggttgctgctcttatt
ctttgccacacaagagaattggcttaccagatttgtcatgaattcgagaggtttagtact
tatttgccggacctgaaggttgcagttttctatggaggtgttagtatcaaggttcacaaa
gatttgctaaaaaatgaatgtcctcacattgttgttggtacacctgggagagtattagct
ttggcaagagacaaagagcttggactgaagaatgtcagacattttattcttgatgaatgt
gataagatgcttgagtcacttgacatgaggagagatgtgcaggagatatttaagttgact
cctcatgacaagcaagtgatgatgttttcagcaacactaagcaaggaaatacgccctgtt
tgcaagaagtttatgcaagatcccatggaaatttatgtggatgatgaggccaaattgact
cttcatggtctcgtacagcactacatcaaattgagtgagcctgagaaaaaccgcaagttg
actgacctccttgatgcattggatttcaaccaagttgttatttttgtaaagagtgtaagc
agggcagctgagctgaacaagttacttgctgactgtaacttcccctccatctgcattcac
tctggaatgcctcaggaagaaaggctaaaacgttacaagaatttcaaggaggggctttca
agaattcttgtggcaacagatttagtaggaaggggaattgacattgagcgtgttaacatt
gttatcaattatgacatgcctgattctgctgatacctacttgcatagggttggcagagct
ggtaggtttggtaccaaggggctagcaattacatttgtatcttctgcatctgattcagaa
gttcttaatcaggtccagtcaaggtttgaggtggacataaaggagcttcccgagcaaatt
gatacttccacttacatgcaagtgtaa
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