Pyrus x bretschneideri (Chinese white pear): 103940468
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Entry
103940468 CDS
T03446
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103940468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103940468
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103940468
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103940468
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
103940468
NCBI-ProteinID:
XP_009348858
LinkDB
All DBs
Position
Unknown
AA seq
2393 aa
AA seq
DB search
MLNFTPTTASQIRFLLQSLNDATSDSVLRELSQFTEYGLEGSILLLQTCLDHLTNYRTDL
KNAALERVLASIFKYLLDRPNFSTVFCECLRNTEINEGILENFSNALHLSVSEKIGIALA
LSDSENLDTRICGKNFCMDQIQKLCESPIAMNSSEQIQNIVIFLQRSEGLSKHVDSFMQM
LSLLQLKDDSFSVLTPLLSDELRDANFLSNVGLLHESRENDFDAILAEMAKEISMGDVMK
ELGYGCTVDSSQCKEILSLFLPLTEITISKIIGMIASTHVGLEDNQNAFSTFRLAVGNST
LSDLPMLNTWNIDVLVDTIRQLAPGTNWIQVIENLDHEGFVIPNQEAFSFFMSVYQHVCQ
ELFPLHVICGSVWKNTEGQLSFLKHAVSAPPEVFTFAHSVRQLAYIDAVHGHKLQLGHAN
HAWLSLDLLDVLCLLAERGHALAVRSMLEYPLKHCPEVLLLGMAHTNTAYNLLQYEVSYT
VFPMMVKNAMGIGMINHLWHINTSLVLRGFVDAHNCDPDSIARILDICQELKILSSVLEM
IPSSLSIRLAALASKKELVDLEKWLSNNLNLYKDTFFEECIKFLKEIQFGGSQDFSTRPF
QHSGAVSNIYVDTATIFTKVLKAHDGLVASSQLTEEMERLSVTIMDSIPRLPNGGTTESS
TDGYADDIEAEANSYFHQMFSGQLTIDSMVQMLARFKESSVKREQSIFECMIANLFEEYR
FFPKYPERQLKLAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQ
FVDRLIEWPQYCNHILQISHLRSTHSELVAFIEQALARISSSHSDSDGSNHASAANHHGP
SQASPGNVELNGSTILHNGQQHSSPLQLQQRHESSLDDRQKASNSSNDIKPPLSSAVQPP
VGPVGDAPRIQKSQSALSAPAMLSSPSPGFVRPTRGVTSTRFGSALNIETLVAAAEKRDT
LIEAPASEIQDKISFIINNISVANVEAKSKEFAEIMKEQYYPWFAQYMVMKRASIEPNFH
DLYLKFLDKVNSKGLNKEIVQATYENCKVLLGSELIKSSAEERSLLKNLGSWLGKLTIGR
NQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAE
IYSMPNLKMNLKFDIEVLFKNLGVDLKEITPSSLLKDRNREVEGNPDFSNKDIGASQPQM
VAEVKLNQVELPVDVGPSNSASHTHISQYATPVHVSPGTLIEDEKVFPDQIPAQGLLPAT
PSQSPFSLPTPISNIATHVVINPKLSALGLHLHFQRVVPIAMDRAIKEIVTGIVQRSVSI
ATQTTKELVLKDYAMESDETRILLAAHLMVASLAGSLAHVTCKEPLRSSISTQLRNSLQG
LNIPNDHLEHAVQLVTNDNLDLGCAIIEQSATDKAVQTIDGEIAQQLSLRRKREGAGTTF
FDANMYTQGGSVPESLRPKPGHLSISQQRVYEDFVRLPWQNQSSPNSHVLPASTAATSAS
AGLNSTFGSASAQINTGFSAGPGSKFDAVSRPLDEAIESNPALHPSASSINVGAGDGVSQ
HSSENDSVIGSFPPAASALELQSVESSDTIQESGISSQPQPSSTVTERLASNISEPSLNT
RDALDKYQIVSQKLEALVTNDARELEIQGVIGEVPEIILRCVSRDEAALAVAQKVFKGLY
ENASNHTHVSAHIAMLTAIRDVCKLVVKELTSWVIYSDEERKFNKDITVGLIHSELLNLA
EYNVQMAKLIDGGRNKPATEFSISLLQSLVIEESKVISELHNLVDALAKLAAKPGSPESL
QQLVEMVKNPAYILGAPSAINVGKEDKARISKDKKASVHSPVSKEDFSNVESVEPDPAGF
REQVSMLFAEWYQICELPGANDATCAHFILQLHQNGLLKGDDMTDRFFRVLTELSVAHCL
SSERTIPSSPQAPQQVQNLSFLAIDIYAKLVFLILKGSSKLFLLSKILGVTVRFIQKDAE
EKKTSFNPRPYFRLFVNWLLDLGSLDPVIDGANFQILTAFANAFHVLQPLKVPTFSFAWL
ELVSHRSFMPKMLVGNGQKGWPYVQRLLVHLFQFMEPFLRNAELGVPVHFMYKGTLRVLL
VLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEISQ
SPRILSEVDAALKAKQMKADVDEYLKTRQQGSSFLTELKQKLLLLPSEAASAGTRYNVPL
INSLVLYVGMQAIQQLQARTPHAQSTQTVPLTVYLVGAALDIFQTLIVDLDTEGRYLFLN
AIANQLRYPNTHTHYFSFIVLYLFAESNQHEIIQEQITRVLLERLIVNRPHPWGLLITFI
ELIKNPRYQFWNRAFIRCAPEIEKLFESVSRSCGGPKPVDESMVSGWVSESAH
NT seq
7182 nt
NT seq
+upstream
nt +downstream
nt
atgctcaattttacgccgaccaccgccagccagattcgcttcctactccagagcctcaac
gatgccacctccgactccgttctccgagagctctctcagtttactgaatatggacttgag
ggaagcattttgctgctacagacctgtctggatcatctcactaattacagaacagactta
aagaacgcagcattggaacgagttcttgcctcaattttcaaatatctccttgacagacct
aatttcagtacggtgttttgtgagtgcctaagaaatacagagattaatgaaggaattctt
gagaatttctctaatgcattacacctatctgtatcggagaaaattggcattgctcttgcg
ctgtcagattctgaaaacctagacaccaggatatgtggcaagaacttttgtatggatcag
atccagaaattgtgtgaaagtcctattgctatgaattcgtctgagcaaattcagaacatt
gttatattcctccagcggtctgagggcctttccaagcatgtggattcctttatgcagatg
ttatctttactgcagctgaaagatgacagtttttctgttttaactccattgctttcagat
gagctccgtgatgccaattttttgagcaatgtgggtttgttgcatgaaagcagagaaaat
gattttgatgctattttagctgaaatggcgaaggaaatcagcatgggagatgtaatgaag
gaattaggttatggatgcacagttgattcatctcagtgcaaagagattttatctcttttc
ttaccactcactgagattactatttcaaaaataattggcatgattgcctctactcatgtt
ggtctcgaggacaatcagaatgcattttcaacattccggttggcggttggtaacagcact
ttatctgatctgcctatgttgaacacctggaatattgatgtccttgtagatacaatcagg
caacttgctcccggtactaactggatacaagttattgaaaatttggatcatgagggattc
gtcattcctaatcaggaggcattctcttttttcatgtctgtatatcagcatgtctgtcag
gagctgttccccctccatgttatctgcgggtctgtttggaagaacaccgagggtcagcta
tccttccttaaacatgctgtgtcagcaccacctgaagtgtttacctttgcccactctgtt
aggcagctggcctatattgatgcagtgcatggccataagcttcaacttggacatgcaaat
catgcatggttgagtcttgaccttttggatgtactgtgtctactagctgagaggggtcat
gctcttgctgttcgatcgatgcttgagtatcctcttaaacactgtcctgaagtcctgctt
cttgggatggcgcatacaaatactgcttataacctgctgcaatatgaagtgtcttatact
gttttccccatgatggtaaaaaatgccatgggcattggcatgattaaccacctctggcat
attaacacctcactggtgctgaggggatttgtggatgctcacaattgtgatccagatagc
atagctagaattttggatatctgtcaagagctaaagattctgtcatctgtcctagagatg
atcccttcctctttaagtatcagattggcagcccttgcttctaaaaaagagcttgtagac
cttgagaagtggttgagtaataatttgaatttgtataaggatactttctttgaggagtgc
ataaagttcttgaaggagattcaatttggtggttcacaggatttttccaccagacctttc
caacattctggtgccgtgtctaatatttatgtggacactgctactatcttcacgaaggtt
cttaaagctcatgatggcttggttgcctctagccaacttactgaggagatggaaaggttg
tctgtaacaattatggattcgattccaaggctgccgaatggtggcacgacagagtcttca
actgatggatatgcagatgatattgaagctgaagcaaactcttacttccatcaaatgttt
tctggtcaattgacaattgattcaatggtccaaatgcttgcccgattcaaggaatcttct
gtaaaaagggaacagtcaatttttgagtgtatgattgcaaatctgtttgaagagtataga
ttcttccccaagtatcctgaaagacagctcaaacttgctgcagttctgtttggctctgtc
atcaagcaccagctcgtaactcatctgactcttgggattgctctgcgtggtgttttagat
gcattgcgcaaacctgcggattcaaaaatgtttgtgttcggaactaaggccttggagcag
tttgtggatcgtctgattgagtggccgcagtattgcaatcatattcttcaaatatcccat
ctgcggagtactcattcagagcttgtggctttcattgaacaggctcttgccaggatatct
tcaagccattcagactcggatggaagtaaccatgcttctgctgctaatcaccatggtcct
agtcaagctagcccaggaaatgtggagttaaatggttctaccatcttacataacgggcaa
caacattcttctccactccagcttcaacagagacatgaaagttctcttgatgaccgtcaa
aaagcctcgaattcatcaaacgacataaagccacctttatcttctgctgtgcaacctccg
gttggtcctgtaggcgatgctcctcgtattcagaagtcacaaagtgcactcagtgctccg
gcaatgttgtcttctccttcccctggtttcgttcgtcctacgcgaggagttacttctacc
aggtttggctctgctttgaatattgaaacattagttgctgccgccgagaaaagagatact
cttattgaggctccagcatcagagattcaggacaagatatcatttataattaataatatt
tcagttgccaatgttgaagctaagtcaaaggagtttgctgaaataatgaaagagcagtac
tatccttggtttgcacagtatatggttatgaaaagggcaagcattgagccgaattttcat
gatttgtacctgaaatttctggacaaagttaattccaagggtttgaataaggagattgtt
caagccacttatgagaactgcaaggttcttcttggatctgagcttataaagtcaagcgca
gaagagcgttcgttgctaaaaaatttaggtagctggcttgggaagcttacaattggaagg
aatcaagtcttaagggctcgggaaatagatcccaaatctttgattatagaggcatatgag
aaagggttgatgattgcagttataccctttacttcaaagattctggagccatgccaaagt
agcttggcatatcagccaccaaatccttggacaatgggtattcttggattacttgctgag
atatattcaatgccaaacttgaaaatgaacctgaagtttgacatcgaggttctatttaag
aaccttggtgtggatttgaaggagataaccccaagttctctactcaaggaccggaacaga
gaagttgaagggaatcctgatttctctaacaaagatattggagcatcccaaccacagatg
gttgccgaagtgaaactaaatcaagttgaactaccagttgatgttggtccatctaattct
gcaagccatacacatatatctcagtatgcgacccctgttcatgtttcaccgggaacctta
atcgaggatgaaaaggtgtttcctgatcagattcctgctcaaggactgttaccagctact
ccatcccagtcaccattctctcttcccacaccaatatctaatattgcaactcacgtggtt
atcaacccgaaactcagtgctttgggattgcacttgcattttcagagggtggttccaatt
gcaatggacagagctatcaaagagatagtaactggtatcgttcagcgcagtgtttctata
gctactcagacaactaaagagcttgtcttaaaggattatgccatggaatccgatgagaca
agaatattactggcagctcacttgatggttgcaagtttggcaggaagtctagctcatgta
acttgcaaggaaccgttgcgtagttcaatatcaacccagctgcggaattcccttcaggga
ttaaatattccaaatgatcatctggagcatgctgtacaacttgttactaatgacaatctg
gatcttggctgtgcaatcattgaacagtctgctactgataaggcagtacaaacaattgat
ggagaaatagctcaacaactttcattaagaaggaagagggaaggtgcaggtacaacgttt
tttgatgctaacatgtatacacaaggaggcagtgtgcccgagtcccttcgcccaaaacct
ggtcatttgtccatttctcaacaacgagtttatgaggactttgtgcggcttccctggcaa
aaccagtctagcccgaattcgcatgttcttcctgctagtactgcagctacatctgcaagt
gcaggtctaaatagcacatttggttcagcctcggctcaaattaacacaggcttctcagca
ggccccggaagcaaatttgatgcagtttctcgtccactggatgaggcgattgaatccaat
ccggctctgcatccaagtgcatcctctattaatgttggagcgggtgatggtgtttcccag
catagttctgagaatgattctgtcattggttcatttcctcctgctgcttctgccctagag
ctgcaatcagtagagtcatctgatactatacaggagtctggaatttcttcacagccacaa
ccgtcatctactgtaactgaacgtctggcaagcaacatatcagaaccttctctcaatacg
agggatgcattggataaataccagattgtttcacagaagcttgaagctttggtaaccaac
gatgctagagagttagaaattcagggagtaattggtgaagttcctgagattatactcagg
tgtgttagtcgagatgaggctgccttggctgtggctcaaaaggttttcaagggtttatac
gaaaatgcatcaaaccatactcatgtcagtgctcatattgcaatgctgacagctattcgc
gatgtttgcaagcttgttgttaaggagctcactagttgggttatttattcggatgaggag
cggaagtttaacaaagatattactgttggcctcattcacagtgaattgctaaatcttgca
gagtacaatgttcaaatggcaaaacttattgatgggggcagaaataagcctgcaactgag
ttttcaatttcccttctccaatctttggtgattgaagaatctaaagttatatcagaactt
cataatcttgttgacgcattggcaaagctcgctgcaaagcctggatctcctgagtcgcta
cagcagctggttgaaatggtaaagaatcctgcttatattcttggtgcgccgtctgctatt
aatgtaggaaaagaggacaaagccagaatatctaaagataaaaaggcttctgttcactct
ccggtgagcaaggaagactttagtaatgtggagtctgtcgaaccagatcctgctggattc
cgtgagcaggtgtctatgctgtttgcagagtggtaccagatttgcgaacttcctggtgca
aacgatgcaacttgtgcccattttatcttgcagttgcatcaaaatggtctgctgaagggg
gatgatatgacagaccggtttttccgtgtcctcacagagctatctgttgcacattgccta
tcttctgagaggacaattccaagctcaccgcaagcacctcaacaagtgcagaatctctcc
ttccttgctattgatatttatgctaagcttgtcttcttaattttgaagggatcgagtaaa
ctatttctcttgtctaagatattgggagtcacagtgagattcattcaaaaggatgcagag
gagaagaaaacatctttcaatccaagaccgtattttagattgtttgtcaactggcttcta
gaccttggttctttggatcctgtgattgatggtgctaactttcagatattgacagcattt
gcaaatgcatttcatgttttgcagccccttaaggttcctacgttcagctttgcatggctt
gagttggtgagtcataggagtttcatgccaaaaatgcttgttggaaatggtcagaagggt
tggccctatgtccaacgtttgctggtacatttgtttcaatttatggagccatttttgagg
aatgctgaacttggagttccggttcatttcatgtataaaggcacacttagggtgcttcta
gtgctacttcatgattttccggagttcctttgtgattatcattttactttctgtgatgta
atccctccaagctgcattcaaatgcgaaatatcatcctcagtgcatttccccgtaatatg
aggctaccagatccatctactcccaacttaaagattgatttgcttgcagaaatcagtcag
tctccacgtattctttccgaggttgatgcagctctaaaagcgaagcagatgaaagctgat
gtggatgagtatctcaagacaaggcaacaaggttcttcatttctgactgaactgaagcaa
aagttgctccttttaccaagcgaagctgcctcagctggtactcgttacaatgtacccctg
atcaactcccttgtgctttatgttgggatgcaggctatccagcagcttcaggctagaaca
cctcatgcgcaatctacccaaactgttccattgactgtctatttggtgggtgctgctttg
gatatttttcagactctgatagtggacctagatactgaagggcgctaccttttcctaaat
gcgatcgcgaaccaactgcgttatccaaacacccatacccattacttttctttcattgtt
ttgtacttgtttgctgaatcaaaccagcatgaaattatccaggagcaaatcacaagggta
ttgttggaacgtctgattgtcaaccggcctcatccatggggtcttctaattaccttcatt
gagcttatcaagaatccgagataccagttctggaaccgagctttcatcagatgtgcgcca
gagattgaaaaactctttgaatctgtctcaaggtcttgcgggggaccaaaaccagtggac
gaaagtatggtctcaggttgggtatcggagagcgcccactaa
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integrated database retrieval system
