Pyrus x bretschneideri (Chinese white pear): 103940757
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Entry
103940757 CDS
T03446
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103940757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pxb03041
]
103940757
03009 Ribosome biogenesis [BR:
pxb03009
]
103940757
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103940757
Spliceosome [BR:
pxb03041
]
Complex A
U1 snRNP components
U1 related factors
103940757
Complex B
103940757
Ribosome biogenesis [BR:
pxb03009
]
Eukaryotic type
Pre-60S particles
Helicases
103940757
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Transformer
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
103940757
NCBI-ProteinID:
XP_009349208
LinkDB
All DBs
Position
Unknown
AA seq
1183 aa
AA seq
DB search
MATEEPAGPRYAPDDPTLPNPWKGLIDGSTGLLYYWNPETNVTQYEKPASLPPPLPAGPP
PATATPQLAAIPVAHSVQPKGVMPQDGQQIMQAPQQHGSQVSQFSQQHGHLMAQQMNLTS
YAQQQGSQMAQPGHQQSSQLGQPMQQHGQMMQHPGQQMPQAQVHQGQQMPQQLGQHTPQG
HGSQGQQRLQQLGQHTPQSHGSQMHPFAHQQMHYRPYQQSIPPQGQQSSQPQTLHNAQAQ
PLANQQEYKAAFPQREEDDFQQRNQIGVSSSRFQQAGASSVQNLPTGTNPVQMPQRSVHQ
GPTQQFGSPLGNMQHPSSFGHLQQPGADLAHHQHGSRFQSQMDPAMIHGQQSNGPPAGLR
MGHENNFHGQGGNDYYFNSNNEGTTGPQQPKLASIPIAKSQQEMSGGPPFQNATPGHSNA
LNTVPGHSMHNVYSHATGAPPFPNNSLVKPPYVRPTSLTSLSPVEVYRQQNEVTASGDNV
PAPFMTFEDTGFPPEILREIHAAGFTSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYL
MPAFILLRQRHNNSQNGPTVLVLAPTRELATQIQDEVLKFGRASRVSCTCLYGGAPKGPQ
LKELDRGADIVVATPGRLNDILEMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVDQIP
PHRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVNELAANKAITQYVEVVPQMEKQRRL
EQILRSQERGSKIIVFCSTKRLCDQIARSIGRTFGAAAIHGDKSQGERDWVLNQFRSGKS
PILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDWKY
AADLIKVLEGANQQVPPEVREIALRGGPGFGKDRNPMNRFDSGGPVNGAAGRWDSSGRDG
MRDGGFGGRGSMRDGAFGGRGGMRDGGFGGRGGMRDGGFGGRGGMRDGNFGGRGSMRDGN
FGGREGHRDGAGSGRGGRGDFFSGPGNRGRGFGGPGGGNIGWGRSGSGAQDRYNSMAGRG
GRGRGRFDNRVDFPDRSRGRNYSRSPDRVRTWDINRSRSRSRSRSRSWSRSRSRSWTRSR
SRSRSWSRGRSRSYSRSRSHSRNRSRSPSYERYERPPRVSKFDMKDPVPESVVPPVPEMV
PTSPDTQVNVYPDTKPVGELPVVEQTGLVDTQGGGDPSHHSLI
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagaggagccggctggtccacggtatgcgccagatgatcctacacttccaaat
ccgtggaagggtttgattgatggtagcacgggtttgttatactactggaatcctgaaact
aacgttacccagtatgaaaaaccggcttctttgcctccgcccttgccagcaggcccgcct
cctgctactgccacgccacagctggctgcaattcctgttgctcattcagtgcaaccgaag
ggagtgatgcctcaggatgggcagcagataatgcaagctccacaacagcacgggtcacaa
gtgagccagttttctcaacagcatggacatctaatggcacaacagatgaatctgacatca
tatgctcaacagcagggctcacaaatggctcaacctggacatcaacagagttcacaattg
ggacagcccatgcaacagcatgggcaaatgatgcagcatccgggtcagcaaatgccccag
gcacaagtgcatcaagggcagcaaatgcctcaacaactgggacaacacacaccacagggt
catgggtcacaagggcagcaaaggcttcaacaactgggacaacacacaccacagagtcat
gggtcacaaatgcatccgtttgcacatcagcagatgcattataggccttatcagcaaagc
attcctccccaagggcaacagagttcacaaccgcaaactctgcataatgcacaagcgcaa
ccactggcaaatcaacaagaatataaagctgcattcccccagagggaggaagatgatttt
caacaaagaaatcaaattggtgtttcttcatcccggtttcaacaagcgggagcctcatct
gtgcagaatcttcctactgggaccaatccagtacaaatgccacagaggtctgttcatcaa
ggcccaactcaacaatttggcagccctttgggaaacatgcaacatccttcctcttttggt
cacttgcagcaaccaggggctgatttggctcaccatcaacatggttctaggttccaaagt
caaatggacccagcgatgatacacggtcagcagtcaaatgggcctcctgctggattaaga
atgggtcatgaaaataatttccacggtcaaggtggaaatgactattacttcaatagtaac
aatgaagggacgacaggtcctcagcagcccaagcttgcatctattccgattgcaaaaagc
cagcaggagatgagtggtggccctccatttcaaaatgctacacctggtcattccaatgcc
ctgaataccgtgccaggtcattccatgcataacgtgtacagtcatgcaacaggtgctcca
ccattcccaaataactctttggtgaagcccccttatgtcagacctacaagtctcactagt
ctctcacctgttgaagtttatcgtcaacaaaatgaagttactgcatcgggtgacaatgta
cctgcaccatttatgacatttgaagacactggttttcctccagagatattgagagagatt
catgctgctggcttcacatctcccacgccaattcaggcacaaacatggccaattgctctt
caaagtagggatatagttgcaattgcaaaaactggttctggaaaaactttgggctatttg
atgcctgcattcattcttcttagacaacgccataataattctcagaatggcccaacagtc
ctggttttggccccaacacgggagcttgcaacacagatacaagatgaggttttgaaattt
gggcgagcttctagggtatcttgcacgtgcttgtatggtggagctccgaagggccctcag
ctaaaagagttagatcgtggagcagacatagttgtggcaactcctggtcgtcttaatgac
atactggaaatgaagaaaattgattttcggcaagtttctctacttgtacttgatgaagca
gatcgaatgcttgacatgggttttgaacctcaaatccgtaaaatcgtggatcaaataccc
ccgcacagacaaactcttatgtacacagcaacatggcccaaagaagtaagaaaaatagca
agtgatcttcttgttaatcctgtacaagtgaatattggcagcgttaatgagcttgctgca
aacaaggctatcacacagtacgttgaagttgtcccacaaatggagaagcaaaggcgtttg
gagcagatcctgagatcccaagaacgaggttctaagatcattgtcttttgttccaccaag
aggttatgtgatcagattgcacgtagtattggacgcacttttggggctgctgcaattcac
ggggacaagtctcaaggtgagcgagactgggttttaaatcagttccggagtggaaaatcc
ccaatattagttgccactgacgttgctgctcgtgggcttgacatcaaagatataagggtg
gtggtaaactatgatttccctactggtgttgaagactatgttcaccgaattggaagaact
gggagggctggcgcaactggggtgtcatacacctttttctctgagcaagactggaaatat
gcagctgatttgattaaagttctggagggagctaaccagcaagtgcctccagaggtgcga
gagattgctctacgtggtgggcctggttttggcaaggataggaatccgatgaaccgtttt
gattctggtgggcctgttaatggtgctgctggacgttgggattccagcggccgtgatgga
atgagggatgggggttttggtggtcgtggcagtatgagggatggggcctttggaggtcgt
ggtggcatgagggatggtggttttggtggtcgtggcggcatgagggatggtggttttggt
ggtcgtggcggcatgcgagatggcaactttggaggtcgtggcagcatgcgagatggcaac
tttggcggtcgtgagggccatagggatggtgctggtagtggccgaggtgggagaggcgat
ttcttttctgggcccggaaacaggggccgaggatttggtggtcctggtggtggtaatatt
ggttggggtagaagtggcagtggcgcgcaagatcggtacaacagtatggctggccgtggg
ggacgtggacggggacgatttgataatagagttgattttcctgacaggagcagaggcagg
aactatagccgtagccctgacagagttcgaacatgggatattaacagaagcagaagccgg
agtcgaagccgcagccgtagctggagtaggagtaggagtcggagctggaccaggagtcgg
agtcgtagccggagctggtcccgtggccgtagccgcagctacagtcgtagccgaagtcat
agtcgcaaccgtagtcggagccccagttatgaaagatatgagaggccgccacgcgtgtca
aaatttgatatgaaggatcctgttcccgaatctgtggttccacctgtaccagagatggtt
cctacgtccccagacacacaagtcaatgtatatccagacaccaagcccgtgggggaactg
ccagtggttgagcaaacggggctagtggatacacagggcggaggagacccttcccatcac
tcattgatttaa
DBGET
integrated database retrieval system
