Pyrus x bretschneideri (Chinese white pear): 103941454
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Entry
103941454 CDS
T03446
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103941454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pxb03041
]
103941454
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103941454
Spliceosome [BR:
pxb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
103941454
Complex B
103941454
Complex C
U2 SnRNP specific factors
103941454
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-GeneID:
103941454
NCBI-ProteinID:
XP_009349922
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MSKRKFGFEGFGINKQSTFDFERSQQAPQRLYVPPSSRGGNSHDNFEDTDLDNIDYDDND
GSNDPGNDNSHGDGGGGDEEVDPLDAFMEGIHEEVRSAPPPKQKEKAEKYKDDEEEDHME
SFLRAKKDVMLTLASDALHAGYDSDEEVYAAAKAVDAGLLEYDSDDNPIVLDKRKIEPIP
ALDHSSIDYEPFNKDFYEEKESISGMSEEDVFEYKKSLAIRASGFDVPRPVKTFEDSGFS
SQLMTAIKRQDYVKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL
QKEEGPIGVICAPTRELAHQIYLESKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVV
ATPGRLIDMLKMKALTMIRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM
PRKVEKLAREILSDPIRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDEGDV
LVFASKKAAVDEIESQLAQKGFKVTALHGDKDQASRMDILQKFKSGIYHVLVATDVAARG
LDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNSLVAA
GQIVSTELMDLAMKDGRFRSKRDSRKGGGKKGRGRGGGGGGGRGVRGVDFGLGIGYNTES
NNSSSHTVASRSATVTPVRTGMMSQFKTKFVAASSNSPSQASGNSYSAPSRPALRGFVSG
GSIGGDVYRTQATSTIAPALTPAPTSVVNVSSQNSGVNASQKPSESSRDKPRERRRRSGW
DC
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagaaaattcggatttgaaggctttggcataaacaagcaatccaccttcgat
ttcgagcggtcacagcaagcccctcagcggctctacgtccctccgtcgtctcgcggcgga
aacagccacgacaacttcgaagacaccgacctcgacaacattgattacgacgacaacgat
ggttccaatgaccccgggaatgacaacagccacggcgacggtggcggcggtgatgaggaa
gtagatcctctggatgctttcatggaggggattcacgaggaggtgaggtcagctccgccg
ccgaagcagaaagagaaagccgagaagtacaaggacgatgaggaggaggatcacatggag
agttttctgagggctaagaaggacgtgatgcttacgctggcatcggatgctttacacgcc
gggtatgactccgacgaggaggtatatgcggccgccaaggccgtcgatgccgggttgttg
gagtacgattcggatgataatcccattgttcttgacaagaggaagatcgagccaattcca
gctctcgatcatagttcaatcgactacgagccttttaataaggatttttacgaggagaaa
gagtcgatttcagggatgagtgaggaggatgtttttgagtacaagaagagcttggccatc
cgtgcgtcgggttttgatgtgccgaggccggtcaagacatttgaagactctggattttct
tcacagctcatgactgccataaaaagacaagactatgtaaagccgacaccaatacagtgc
caagctctacccatagttctttccgggagagatatcattggtattgcgaaaactggttct
ggaaagacggctgcttttgtccttccaatgattgtccacattatggatcagccggaactt
caaaaagaagagggtcctattggagtgatatgtgcacctactagagagctggcgcaccaa
atatacttagagtccaagaaatttgctaaatcacatgggatacgtgtctctgctgtatat
ggtggaatgtctaagcttgatcagttcaaagaacttaaggcaggatgtgaaatagttgtt
gctactcccgggagattaatagacatgcttaaaatgaaggcactgacaatgataagggca
acttacctagtacttgatgaggctgatcggatgtttgaccttgggtttgagcctcaaatt
aggtctattgttggtcagattcgaccagaccgacagacattgctcttttctgcaacaatg
cctcgtaaagttgaaaagttggctagggagattctctctgatcctataagagttacagtg
ggtgaggtgggaatggccaatgaggatatcactcaggttgttcatgtaattccttctgat
gctgagaagttgccctggcttcttgagaagttacctggaatgattgatgagggtgatgtt
ttagtgtttgcttcgaaaaaagctgcagtggatgagattgagtcacagcttgctcagaaa
ggttttaaagtcacagctctgcatggtgacaaggaccaggcatctcggatggatattttg
caaaaatttaaatctggcatttaccatgttcttgttgcaactgatgttgctgcccgtggt
cttgacatcaagtcaattaagtcagttgtgaactttgatattgcaaaagacatggacatg
cacgtccatcgaattggtagaacaggtcgtgctggtgataaggatggcactgcatacact
cttattacacagaaagaggcacgctttgctggtgagttggttaatagcttggttgctgct
ggtcagattgtttccacggagctcatggaccttgcgatgaaggatgggagattcaggtcc
aaacgtgattcaagaaaaggaggtggaaagaaaggtagagggaggggaggcggtggcggc
ggtggtcgaggtgtgcgtggggtggattttggtctgggaattggatataatacggagtcc
aataattcttcatcgcataccgttgctagtcgatctgctacagtaactcctgtgaggaca
ggaatgatgtcacagttcaagactaaattcgttgctgcttcatccaactctccaagtcaa
gcttcaggtaacagctatagtgcacccagcagaccagcattacgaggctttgtatctggt
ggttcaattggtggggatgtatatagaactcaggcaaccagtacaattgctcctgctctt
acccccgctcctacatcagtggtaaacgtatcttctcagaactctggagtaaatgcaagt
cagaagccctctgaaagttctagagataaacctagagaaaggcggaggcggtctggttgg
gactgttaa
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