Pyrus x bretschneideri (Chinese white pear): 103944375
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Entry
103944375 CDS
T03446
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103944375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103944375
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
103944375
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
103944375
NCBI-ProteinID:
XP_009353093
LinkDB
All DBs
Position
Unknown
AA seq
914 aa
AA seq
DB search
MSQDAVTVDQSPPPQTKSDALQTLTKGAFSSSISKLSDSSRFLPNSKDFYFYRNFDEFRV
PIEQITKESQTMLGSIGSSAPVWRKPVAFPDDLDDAYDWLVNVNDEALERFDSSVDEFKI
VRKEAEEAKRPTSAAMDTDDGFQLVCGKKKKGPTGSAAASGNDDSSQVSSAVKGASKDKK
TVVAAKPKVPFHIPSIRRPQEQFNILVNNANQPFEHVWLQRSEDGQQFLHPLEKLSVLDF
VDNNIGDVESVKPASLESTPFKLVEEVKDLKELAAKLRAVNEFAVDLEHNQYRSFQGLTC
LMQISTRTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDIMWLQRDFGIYICNL
FDTGQASRVLKLERNSLEYLLQNLCGVTANKEYQNADWRLRPLPEEMIRYAREDTHYLLH
MYDLMRTQLCLMPKESENSDTPLVEVYKRSYDLCMHLYEKELLTENSYLHIYGLQGAGFN
SQQLAIVSGLCEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTTSKLKRLVKSKHPYIE
RNLGSVVSIIRHSMQNAAFFEPAVEHLKVARAGMASEENILVNDGSEALLPDQSVSNLSN
GDLSVVSPPSQQHRMEYKGIAFGASELVRNGQGNSPETGSPISVNLGQNSVPGQSREARS
NACLLDSAKVTGVSVQVQKKPSRAFSSLLGSAVPKRKFDVDKKGKEDNKLEQIRSSVNFP
FHSFSGGSEKSKPTLEARDKSSETPHSEGPLTASPSGSGLGDIITLENDSDGGEPVDGSS
ETRNEPEENDSVPSALGRDGEDEPVSLSDLSSSFQKCFQSLNQNRKTREVEKSQESGGLQ
VKPFDYEAAKSKVIFGAKPVREAGAGEGVKSLNSAGKKKSLAGLVSNDDGSKELGQGRRR
QAFPATGNRSATFR
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagacgccgtgaccgtggaccaatctccgccgccgcagacgaagtccgacgcc
ctccaaaccctaaccaagggcgctttctcctcgtcgatttccaagctctccgactcctcg
cgattcttgcctaacagcaaggacttctatttctaccgcaactttgacgaattcagagtc
ccgatcgagcaaatcaccaaggaatcgcagacgatgcttggctcgattggctcgtcggcg
ccggtttggaggaaaccggtggctttccccgatgacttggacgacgcgtacgattggctc
gttaatgtgaacgacgaggctctggagaggtttgactcgtcggtggacgagttcaagatt
gtgaggaaggaggcggaggaggccaagcggccgacgagtgcggctatggacacagacgat
gggtttcaattggtgtgtgggaaaaagaagaaggggcccactgggtcagcagcggccagt
gggaacgatgattcgagtcaggtatcctctgcggtgaagggggcttccaaggacaagaaa
actgtggtcgcggcgaagccgaaagtgccgtttcatataccgagcattcggaggcctcag
gagcagtttaacattttggttaataatgcaaaccagccgtttgagcatgtttggttgcag
agaagtgaggacggtcaacagtttcttcatcccctagagaagctttctgttctggatttt
gttgacaacaacattggggatgttgagtctgtaaaaccggcttcattagagtccacgcca
ttcaagcttgtggaggaggtcaaagatctgaaggagctcgcagctaagctccgtgctgtt
aatgaatttgcggtcgatttggaacacaatcaatatcgatcttttcaaggattgacttgc
ttgatgcaaatttcaactagaaccgaagattttattgtagatactctgaagcttagaatt
catgttgggccatatcttagggaagttttcaaagaccctgccaagagaaaggtgatgcat
ggagcagatcgtgatatcatgtggcttcaacgtgattttggcatttatatctgcaatttg
tttgatactggccaggcttcgagggtgttgaaattggagagaaatagtttggagtatctt
ctacagaacttatgtggtgttactgccaacaaagaataccagaatgcagactggagatta
cgccctctgcctgaggagatgatcagatatgccagagaagatacacactatttattgcat
atgtatgatttaatgagaacacagttatgtctgatgcccaaggaatcagaaaactctgac
actcctttagtggaggtttacaaacgcagttatgatctatgcatgcatctatatgagaaa
gagcttttgacagaaaattcttatctccacatatacgggttgcaaggtgctggtttcaat
tctcagcagcttgccattgtttccggtctttgtgagtggagggatgttgttgcccgtgca
gaggatgaaagtactggctatatattaccaaacaaaactcttcttgaaattgctaaacag
atgcctgtcaccactagcaagttaaagcgattggtgaaatcaaagcacccatacattgag
cgtaatcttggttcagttgttagtatcattagacattctatgcaaaatgctgcttttttt
gagcctgctgtcgaacatctgaaggtggcacgtgcaggaatggcatctgaagagaatata
ttggtcaatgatggatctgaagccttgttacctgatcagtctgtcagcaatttgagtaat
ggtgatttatctgtagtttcacccccgtctcagcagcatagaatggagtataaggggatt
gcatttggtgcctctgaacttgtaagaaatggacaaggaaactctcctgaaactggcagt
cccatttcggtgaatcttgggcagaacagtgttccgggacaaagcagagaagcaaggagc
aatgcctgtttattggattcagcaaaggttactggagtgagcgttcaggtgcaaaagaag
cccagccgtgcctttagttcactgttgggtagtgcagttccaaaaaggaagttcgatgtc
gataaaaagggcaaggaagataataagttggaacaaattagatcttcagtgaacttccca
ttccactcattttcgggcgggagtgagaaatccaaaccaaccttggaagcacgagataaa
agttcagaaactccccattctgaagggccgcttactgcatcaccctctggttctggttta
ggtgacatcataacattggaaaatgattcagatggaggtgaaccggtagatggttcctca
gaaaccagaaatgagcccgaggagaatgattcggtaccatctgctttggggagggatggg
gaagacgaacccgtgtctctctctgatttgtcgtcgagcttccaaaaatgctttcaatcg
cttaaccaaaacaggaagacaagagaagtggagaagtcccaggaatctggtggtttgcag
gtgaagcctttcgactatgaggcagcaaagagtaaggtcatattcggagctaagccggtc
agagaggctggagctggggaaggtgtgaagagcttaaactcagcgggaaagaaaaaatct
ttagctggtctagtttcaaacgatgacggatcaaaagaactaggacagggtagacgacgc
caagcttttccagcaaccggaaatagaagtgcgacatttcgttaa
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