Pyrus x bretschneideri (Chinese white pear): 103946403
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Entry
103946403 CDS
T03446
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103946403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103946403
03041 Spliceosome [BR:
pxb03041
]
103946403
03009 Ribosome biogenesis [BR:
pxb03009
]
103946403
03016 Transfer RNA biogenesis [BR:
pxb03016
]
103946403
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103946403
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103946403
Spliceosome [BR:
pxb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103946403
Complex C
U4/U6.U5 tri-SnRNP related factors
103946403
Ribosome biogenesis [BR:
pxb03009
]
Eukaryotic type
Pre-60S particles
Helicases
103946403
Transfer RNA biogenesis [BR:
pxb03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103946403
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
AAA_27
Motif
Other DBs
NCBI-GeneID:
103946403
NCBI-ProteinID:
XP_009355377
LinkDB
All DBs
Position
Unknown
AA seq
1000 aa
AA seq
DB search
METEAASLKRKSEGEAELEEAPQKQQKRDNGWASVDDEAVACLHDVSYPEGYVVPPPSSS
SSAAAEASEPAKKFPFPLDPFQSEAINCLEKAESVMVSAHTSAGKTVVASYAIAMSLRNK
QRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEI
TREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWLAKIHRQ
PCHIVYTDYRPTPLQHYIFPSGGNGLYLVVDEKGKFREDSFQKALSALAPAADSAKKKEN
GKWQKGLIMGRAAEESDIFKMVKMIIQRQYDPVILFSFSKRECESLAMQMAKMDLNGDNE
KENVETIFWSAMDMLSDDDKKLPQVSHMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLI
KCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICI
LMVDEKLEPSTAKMMLKGSADCLNSAFHLSYNMLLNQLRSEDGNPENLLRNSFYQFQADR
AIPSLEKQAKDLEKERDSIIIEEEDSVKNYYNLLQQYKSLKQELHDIVLSPKYCLPFLKP
GRLVSIQCAKSDESSPSFSIEDPVTWGVILNFQRVKTASEDDASRKPEDSNYTVDVLTRC
RVSTDEVAKKTIKIIPLKEAGEPAVVSISISQINSMSGLCMVIPKDLLPLPARENTLKRV
LETLSRFDKGKIPLLDPEEDMKIESSSYKKVSRRIEALENLFDRHEVARTPLIEQKLKVF
HMKQDLAAKIKSIKKTMRSSTALAFKDELKARKRVLRRLGYVTNDGVVELKGKVACEISS
AEELTLTELMFNGAFKDINVEEMVSLLSCFVWQEKLKEATKPREELDLLFSQLQDTARRV
AEVQLECKVEIDVDSFVSAFRPDIMEAVYAWAKGSKFYEIMSATPVFEGSLIRAIRRLEE
VLQQLIQAAKSIGETELESKFEEAVLKIKRDIVFAASLYL
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggaaacggaagcggcatccctgaagaggaagtcggagggagaggccgagttggaagaa
gctccacagaaacaacaaaagagggacaacggttgggcaagcgtcgacgacgaagcggtg
gcctgcttgcacgacgtgtcgtatcctgagggctatgtcgttcctcccccttcttcttct
tcttcagctgcagcagaagcttctgagcctgccaagaaattccccttccctctcgaccct
tttcagtctgaggccataaactgcctcgaaaaagccgagtccgtcatggtgtctgctcat
acgtcggctgggaaaactgtggtggcatcgtatgcgattgcaatgtctctaagaaacaag
cagcgagtgatatacacttcaccaatcaaagcactgagcaaccaaaagtatagggagttc
aaagaggagttttccgacgttggcttgatgactggcgatgtaactatcgaccccaatgct
tcctgcttggttatgaccacagaaatctggcgtagcatgcagtacaaagggtcagagata
acgcgtgaggtggcgtggattatctttgatgaggtgcactatatgcgtgatagggagaga
ggtgtggtgtgggaagagagcattgttatggctccaaagaatgctcggtttgtgttcctc
tcagcaactgtgccaaatgctaaggaatttgctgattggcttgcaaagattcaccgtcag
ccttgtcacattgtctatactgattataggccaactcctctgcagcattatatttttcct
tctggagggaatggattgtacttggtagtagatgaaaaagggaaatttcgcgaagacagc
tttcagaaagctcttagtgctcttgctcccgctgccgatagtgctaagaagaaggaaaat
ggcaagtggcaaaagggtttgatcatgggcagggctgctgaggaaagtgatatcttcaag
atggtcaaaatgataattcagcgtcagtatgatcctgtaatactttttagctttagcaaa
agggagtgcgaatctcttgcaatgcagatggcaaaaatggatctaaatggggacaatgag
aaagaaaatgtagaaaccatcttctggagtgctatggatatgctttctgatgatgataaa
aagttacctcaggtttcacatatgctaccccttttgaagcgtggaattggtgtgcatcat
tctggcttgcttccaattctaaaggaagtgattgagatattatttcaggaaggcctaatc
aagtgtttatttgccacagagaccttcagcataggattgaacatgcctgcaaaaactgtt
gtgtttaccaatgtccggaaatttgatggtgataagttcagatggctatccagtggagag
tatatacaaatgagtggccgtgctggtcgccgtggtattgataagcgtggaatatgtata
cttatggtagatgagaagctggaaccatctactgctaaaatgatgcttaaaggaagtgct
gattgtttgaacagtgcttttcatttgagctacaacatgcttctgaatcaattacgcagc
gaagatggtaatccagaaaatttgcttcgtaactcgttctatcaatttcaagctgatcgt
gccatccccagtcttgagaagcaagcaaaggatcttgagaaagagagggattcaattata
attgaagaagaagatagtgtaaagaattattacaatctgttacagcaatacaagagtttg
aaacaggaacttcatgatattgtgctttctccaaagtactgcttaccatttctgaaacct
ggtaggcttgtctcaatccaatgtgctaaaagtgatgaaagttccccttctttttccatt
gaggacccggtcacatggggagtgatactaaattttcaacgggtgaaaactgcttcagaa
gatgatgcaagtagaaaacccgaagattcaaactacacagtggatgttctgacaaggtgc
agggtaagtacagatgaagttgccaagaaaaccatcaaaattatccctctcaaagaggca
ggagaacctgctgttgtctccatttccatatctcagataaatagtatgagtggactttgt
atggtcattcctaaggatcttttgccactaccagctcgagaaaacacactgaagagagtt
cttgaaactctgtcaagatttgataaaggaaagattcctcttctcgatccagaagaagat
atgaagattgaaagtagttcatacaaaaaggtgtctcgtaggatcgaggctttagagaac
ctgtttgacaggcatgaagttgctagaactccacttattgagcaaaagcttaaggttttt
catatgaagcaggatttggctgccaagatcaagtcaatcaagaaaacaatgcgctcttcc
actgcattagcttttaaagatgaactgaaggcaagaaaacgggtccttcggaggctagga
tatgttacaaatgatggtgttgtggagttgaagggtaaagttgcttgtgaaatcagcagt
gcagaagagttgaccctgactgagctcatgttcaatggggctttcaaggacataaacgtg
gaagagatggtttctcttctctcatgttttgtatggcaggagaagcttaaggaagctaca
aaaccaagggaagagcttgacctgctattttcacaattacaagatacagctcggagggtt
gctgaggttcagcttgagtgcaaggtcgaaattgatgttgacagctttgtgagtgctttt
cggcctgatattatggaggctgtgtatgcttgggcaaaagggtccaaattctacgagatc
atgtcagctacacctgtttttgagggcagcttgatcagggcaattaggagattagaggaa
gtccttcagcaactgattcaagcagccaagtctattggagaaaccgagcttgagtcaaaa
tttgaggaggccgttttgaagatcaaaagggacattgtctttgcagcttccctatacttg
taa
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