Pyrus x bretschneideri (Chinese white pear): 103947078
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Entry
103947078 CDS
T03446
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103947078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103947078
03012 Translation factors [BR:
pxb03012
]
103947078
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103947078
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103947078
Translation factors [BR:
pxb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103947078
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
Dicer_dimer
nSTAND3
AAA_19
ATPase
NACHT
T2SSE
AAA_11
Motif
Other DBs
NCBI-GeneID:
103947078
NCBI-ProteinID:
XP_009356199
LinkDB
All DBs
Position
Unknown
AA seq
1209 aa
AA seq
DB search
MPSSFLLLHPSPPSLQFPHASSPSPSHPKLIASSSKPSLLAMKDRPPSSYGSVYVPPHHR
LRSAITTPNYTSTTSVGSKLRDNQTAAALNQRSSTNGALAYYQTQQQQFQKPKLQHSSAY
DDGVSEEGSDREAELPSHPTQSPYSCDNEWERKLTMLLCDKEKQELVTREKKDRCDFEKI
AALASRMGLYSHLYSKVAVFSKVPLPNYRFDLDDRRPQREVTLPLGLLRRVEGYLGEFLS
QKSRTKEDLSFSTSNSSGSIATDEGLFEQPESFASSKGVMEKLLWRRSMQLHDKQQAWQE
SPEGRKMLELRRSLPAYKEKDALLAAISRDQVVIISGETGCGKTTQIPQFILESEIEAVR
GAVCSIICTQPRRISAMSVSERVASERGEKLGDSVGYKVRLEGMKGRDTHLLFCTTGILL
RRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPLRPELRLILMSATLDSELFSS
YFGRAPIIHVPGFTYPVRTHFLEDVLEITGCKLMPYNQIDDYGQEKMWKMSKQAPRKRKS
QIASVVEDALKAADFKEYSPQTRESLACWNPDSIGFYLIEYLLCNICESDKPGAILVFMT
GWDDINSLKEKLHANPLLGDPSQVLLLACHGSMASTEQRLIFDEPEDGVRKIVLATNIAE
TSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLY
PKCVYDAFAEYQLPEILRTPLQSLCLQIKSLNLGSISEFLSRALQSPELLAVQNAIEHLK
ITGALDEKENLTVLGRYLTMLPVEPKLGKMLLLGAIFNCLDPVLTIVSGLSVRDPFLTPF
DKKDLAEAAKSQFSRDNSDHLALVRAYEGWKVAERDFAGYDYCWKNFLSAQSMKAIDSLR
KQFFSLLRDTDLVDANTTTHNAWSYDEHLIRAVICYGLYPGICSVVHNEKSFSLKTMEDG
QVLLYSNSVNARDSKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGSFSKGDTDGH
VKMLGGYLEFFMKPAVAEMYQCLKGELDQLIQIKLLNPRMDTHSYHELLSAMRLLLSEDQ
GEGRFVFGRQVLALSKSKPSVVAAQPALVSRTESGPGGDNSKSQLQTLLTRAGYNAPTYK
TMQLKNSQFRATVEFNGMQIMGHPCNNKKSAEKDAAAEAIQWLVSGTQMGHEDINHMSMM
LKRSKKDHN
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgccctcttctttcctcctcctccacccatctcctccgtctctgcaattccctcacgcg
tcgtcgccgtcgccttcacatcccaaactgattgcctcctcctccaaaccctcactcctg
gcgatgaaggatcggcctccttcctcgtacggctccgtctacgtccctccccaccaccgc
ctccgctccgccatcaccacccccaattacacctccactacttcagtcggctccaagctc
cgcgacaaccagactgctgctgctctcaaccagaggagcagcaccaatggtgctctggcg
tactaccagactcagcagcagcagtttcagaagcccaagcttcagcactcttctgcttac
gacgacggcgtttccgaggaaggctccgatcgcgaagctgagttgccgtcgcatccgaca
cagagtccttactcatgtgataatgagtgggaacggaaattaaccatgctgttatgtgac
aaggagaagcaagagttggttacaagggagaaaaaagatagatgcgactttgagaaaata
gctgctttggcaagcagaatggggctttatagccatctgtattcgaaagttgctgtgttt
agtaaggtcccactgccaaactacagatttgacctggatgataggcgccctcagagagag
gtgaccttgcctcttgggttgctgaggagagttgagggatatcttggagagttcctttcc
cagaagtctaggacaaaggaagatctttccttttctacatcaaacagtagtggcagcatt
gctactgacgaagggctttttgagcaaccagaatcatttgcgtcaagtaagggtgtgatg
gaaaaacttctttggcggagaagtatgcagctgcatgataagcaacaagcttggcaggaa
tctcccgaaggtagaaaaatgcttgaacttcgcagaagtcttccggcctataaagagaag
gatgcattattggcagcaatttcacgagatcaggttgttatcatatcaggtgaaactggc
tgtggcaagactactcaaattccacaattcattttagaatctgagatagaagctgttcgt
ggagctgtttgtagtattatatgtacacagcctagacgaatatctgctatgtctgtttct
gaaagagttgcttcagagagaggggagaaattgggtgactcagttgggtataaggttcgg
ttagaaggtatgaaggggagggacactcaccttctcttttgcaccactggcattttgttg
agaagattactagttgatagaaatttgaaaggtataactcatgtgattgtggatgaaatt
catgaacgtggaatgaatgaagattttctgcttattgttctcaaggatctccttcctctg
cgaccagaacttaggctgattttgatgagtgcaaccctagattctgagcttttctcatcc
tactttggtagagctccgataattcatgttccaggttttacatatccagttcgaactcat
tttctggaggatgttctggaaattacgggatgcaaattaatgccatacaatcagattgat
gattatggtcaagaaaagatgtggaaaatgagcaaacaggcgccaagaaagaggaaaagc
caaattgcttctgttgttgaggatgcacttaaagcagccgattttaaggagtatagtccg
cagactcgggagtctctagcatgttggaatcctgatagtatcggtttttatctcattgag
tatctcttgtgcaatatctgtgagagtgacaagcctggtgccattctagtttttatgact
gggtgggatgacatcaattctctgaaggaaaagttacatgccaatcctctattaggtgat
ccaagccaagtcttgttactagcatgccatggttctatggcaagtactgagcagaggtta
atatttgatgagcctgaggatggagtgaggaagatagtgctggctactaatattgctgag
acaagcatcacgattaatgatgttgtttttgtacttgattgtggaaaggcaaaagagact
tcatatgacgcactgaataatactccttgtttgcttccttcctggatttccaaggtttct
gcccaacaaagaagaggaagagcaggacgtgtccagcccggggaatgttatcatctctat
cctaaatgtgtgtatgacgcatttgcagagtatcagttgccagagattttgaggacacct
ctgcagtctctctgtctgcaaataaaaagtttaaacctcggaagcatttctgagttctta
tctagggctctgcagtcaccagagttacttgcggtgcaaaacgccatagagcatttaaag
atcactggggcattggatgagaaagagaatctgactgttttaggacgctatctaactatg
cttcctgtggagccaaaacttggaaagatgctcttgctaggcgccattttcaactgcctg
gatccagttttgactattgtttctgggcttagtgtcagagatcccttcctaacaccattt
gacaagaaagaccttgctgaggctgcaaaatctcagttttcccgagataatagtgatcac
cttgcacttgtgcgggcctatgagggctggaaggttgctgaaagagactttgctggatat
gactattgctggaagaattttctttcagcccaatcaatgaaagctattgattcccttagg
aagcagttcttctctttgcttagggatactgatcttgttgatgctaacaccaccactcat
aatgcatggagttatgatgagcatctcatccgtgcagttatttgctatgggctgtatcct
ggaatctgctctgttgtgcacaatgagaagtcattttcactgaaaacaatggaggatggg
caggtgctgctatactcgaactctgtcaatgctagggattctaaaattccatatccatgg
ctggttttcaatgagaagataaaggtgaactctgttttcctacgggattcaacagctgtg
tctgactcagtgctcctcctattcggtggaagtttttcgaaaggggataccgatggacac
gtgaaaatgctgggaggatatttggaattcttcatgaagcctgctgtagcagaaatgtat
caatgcttaaaaggggaacttgaccagttaattcaaatcaaactactgaaccccaggatg
gacacacatagttaccatgaacttctttctgcaatgcggttgctgctttcggaggatcaa
ggcgaaggtagatttgtatttggccgccaggtccttgcactctcaaagtcaaagccatct
gtggtggcagcacagccagccttagtttcaagaactgaaagtggacccgggggcgacaat
tctaagagtcagctccagacattgctcacacgagcaggatacaacgcacctacctacaaa
actatgcaactgaagaacagccagttccgagctacagtggagtttaacggaatgcaaatt
atgggccacccgtgtaacaacaagaagagtgcagaaaaagatgcggcagcggaggccatt
cagtggctggtgagtggaacacaaatgggccatgaggacatcaatcacatgtcaatgatg
ttaaagagaagcaaaaaggaccacaattaa
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integrated database retrieval system
